View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_16 (Length: 446)
Name: NF1484_low_16
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 21376238 - 21376656
Alignment:
| Q |
18 |
ctcctctgttctctcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21376238 |
ctcctctgttctctcctctattcctccatattatatggaatttttttggcttcctcaatcaatttgtaatcgcattgatcaaacaaccaggaatttcatc |
21376337 |
T |
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| Q |
118 |
tggaaaggttcaaatgataaaggcatttatctggtaggttggaaaaaactacccgtcccatgactcttggtggcctttgaatcaggagagccagggaatt |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21376338 |
tggaaaggttcaaatgataaaggcattcatctggtaggttggaaaaaactacccgtcccatgactcttggtggcctttgaatcaggagagccagggaatt |
21376437 |
T |
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| Q |
218 |
gaatacttgccttcttggaaagcttgtttgggatttgatccaatcatctgaaaaactttgggtcagtatcctctctaacaaatatgtggttggtcataac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21376438 |
gaatacttgccttcttggaaagcttgtttgggatttgatccaatcatctgaaaaactttgggtcagtatcctctctaacaaatatgtggttggtcataac |
21376537 |
T |
|
| Q |
318 |
atccttcaagcaactaataattcgaacaactctccaatttggtcctcaattatcaaagctaaaaatgcccttaaagtgggatactcttggtgtgtcgggt |
417 |
Q |
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| T |
21376538 |
atccttcaagcaactaataattcgaacaactctccaatttggtcctcaattatcaaagctaaaaatgcccttaaagtgggatactcttggtgtgtcgggt |
21376637 |
T |
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| Q |
418 |
ccgtttcttcatccctttg |
436 |
Q |
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| T |
21376638 |
ccgtttcttcatccttttg |
21376656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 241
Target Start/End: Complemental strand, 1353292 - 1353140
Alignment:
| Q |
90 |
cattgatcaaacaaccaggaatttcatctggaaaggttcaaatgataaaggcatttatctggtaggttggaaaaa-actacccgtcccatgactcttggt |
188 |
Q |
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||||||||||||||| || |||||||| | || | || ||||||||||| ||||| || | |||||||||||||| | | | ||||| | |||||||| |
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| T |
1353292 |
cattgatcaaacaactagaaatttcatttagagaagtacaaatgataaaagcattcatttagtaggttggaaaaagatttctcgtcctaaatctcttggt |
1353193 |
T |
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| Q |
189 |
ggcctttgaatcaggagagccagggaattgaatacttgccttcttggaaagct |
241 |
Q |
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|||||| ||||||| ||| ||||| ||||||||||||| | |||||||| |
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| T |
1353192 |
ggccttggaatcagatcagctagggaggcgaatacttgccttttaggaaagct |
1353140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 35062642 - 35062546
Alignment:
| Q |
64 |
tggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatctggaaaggttcaaatgataaaggcatttatctggtaggttgga |
160 |
Q |
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||||||| |||||||||||| | |||||||| |||||||||| ||||| || | || ||| |||||||| ||||| || ||||||||||||||| |
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| T |
35062642 |
tggcttctccaatcaatttgtgatagcattgataaaacaaccagaaatttaatttagagaggctcaaatgacaaaggtatccatctggtaggttgga |
35062546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 6640573 - 6640479
Alignment:
| Q |
31 |
tcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatctggaaagg |
125 |
Q |
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||||| |||||| |||| |||||| | ||| ||||||||||||| |||||| | | ||||||||||||||| | ||||||||||||||||| |
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| T |
6640573 |
tcctccattcctacatactatatgcagattaattggcttcctcaaaatatttgtgatagtattgatcaaacaacccgcaatttcatctggaaagg |
6640479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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