View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_18 (Length: 427)
Name: NF1484_low_18
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 40082755 - 40082381
Alignment:
| Q |
16 |
ataaatacatcatcaattcaatcaatggaaaggtcataatccattaaatgaggatctatggctcataagtgctcgattggttcttgagcttacatcccta |
115 |
Q |
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| T |
40082755 |
ataaatacatcatcaattcaatcaacggaa-ggtcataatccatgaaatgaggatctatggctcataagtgctcgattggttcttgagcttacatcccta |
40082657 |
T |
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| Q |
116 |
taatacaacaataatgctcaaacaatctggtaaatgtttctttcacattatttgaaatttatgctttcatttttagtttcaaaaccatacatagnnnnnn |
215 |
Q |
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| T |
40082656 |
taatacaacaataatgctcaaacaatctggtaaatgtttctttcacattatttgaaatttatgctttcatttttagtttcaaaaccatacatagaaaaaa |
40082557 |
T |
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| Q |
216 |
nnnnnnttacaacaaagttcattttttgaatttaataaaacaaagttcattttatatgttggaactccaataaattaacatgtcatgaaaaaatcatcat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40082556 |
caaaaattacaacaaagttcattttttgaatttaataaaacaaagttcattttatatgttggaactccaataaattaacatgtcatgaaaaaatcatcat |
40082457 |
T |
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| Q |
316 |
cccttttttcttttctttgcagtcctcaaataatattatgtggtcactccactagttatgtaggatattactattc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40082456 |
cccttttttcttttctttgcagtcctcaaataatattatgtcgtcactccactagttatgtaggatattactattc |
40082381 |
T |
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