View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484_low_19 (Length: 414)
Name: NF1484_low_19
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 23587685 - 23588072
Alignment:
| Q |
13 |
gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctgg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
23587685 |
gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttccctacttactattgaggaaggtatctttgaggtcaaagctacagctgg |
23587784 |
T |
|
| Q |
113 |
tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatcca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587785 |
tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatcca |
23587884 |
T |
|
| Q |
213 |
agggctcttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587885 |
agggctcttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggta |
23587984 |
T |
|
| Q |
313 |
ttgacttttacactaccatcactcgtgctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaagtg |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23587985 |
ttgacttttacactaccatcactcgggctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaagtg |
23588072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Original strand, 23596537 - 23596924
Alignment:
| Q |
13 |
gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctgg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23596537 |
gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttcacttcttactattgaggaaggtatctttgaggtgaaagctacagctgg |
23596636 |
T |
|
| Q |
113 |
tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatcca |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23596637 |
tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaagatattagtggaaatcca |
23596736 |
T |
|
| Q |
213 |
agggctcttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggta |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23596737 |
agggctcttagaaggttgagaactgcttgtgagagagctaagaggactctttcctctactgctcaaaccaccattgaaattgattctttgtttgagggta |
23596836 |
T |
|
| Q |
313 |
ttgacttttacactaccatcactcgtgctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaagtg |
400 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23596837 |
ttgacttttacactaccattactcgcgctcgttttgaagagctcaacatggatctatttaggaagtgtatggagcctgttgagaagtg |
23596924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 19 - 400
Target Start/End: Complemental strand, 54396633 - 54396252
Alignment:
| Q |
19 |
agaacgttcttattttcgatcttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatac |
118 |
Q |
| |
|
||||||| |||||||| || | || ||||||||||| |||||||| || ||||||||||||||||| ||||| || ||||||||||| ||||||||||| |
|
|
| T |
54396633 |
agaacgtgcttatttttgacttgggaggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatac |
54396534 |
T |
|
| Q |
119 |
acatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggct |
218 |
Q |
| |
|
||| | || |||||||||||||||||||| |||||||| ||||||||| || || | |||||| |||||||||||||||||||| ||| |||| ||| |
|
|
| T |
54396533 |
tcatcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagct |
54396434 |
T |
|
| Q |
219 |
cttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgact |
318 |
Q |
| |
|
| || ||||| ||||| ||||| |||||||||||||| || ||||| || |||||||| || || || ||||||||||| |||||||| || ||||| | |
|
|
| T |
54396433 |
ttgaggagattaagaacagcttgtgagagagctaagagaacactttcttcaactgctcagacaacaatagaaattgattctttgtttgaaggaattgatt |
54396334 |
T |
|
| Q |
319 |
tttacactaccatcactcgtgctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaagtg |
400 |
Q |
| |
|
| || | || || || | || | |||||||| | || |||||| |||||||||| |||||||| |||||||||||||| |
|
|
| T |
54396333 |
tctatgcaactattacaagggcgagatttgaagaattgaatatggatttgtttaggaaatgtatggaacctgttgagaagtg |
54396252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 35132644 - 35132600
Alignment:
| Q |
33 |
ttcgatcttggtggtggaacttttgatgtttcactacttactatt |
77 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
35132644 |
ttcgatcttggtggtggcacttttgatgtttcaatacttactatt |
35132600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 8102883 - 8102496
Alignment:
| Q |
13 |
gtgagaagaacgttcttattttcgatcttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctgg |
112 |
Q |
| |
|
||||||||||||| | || || ||| | |||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| || || ||||| || || |
|
|
| T |
8102883 |
gtgagaagaacgtgttgatctttgatttgggtggtggtacttttgatgtgtcacttcttactattgaagagggtatatttgaagttaaggctactgcagg |
8102784 |
T |
|
| Q |
113 |
tgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatcca |
212 |
Q |
| |
|
|||||| ||| | || |||||||||||||||||||| ||||| | ||||||||||||||| || ||||||||||| |||||||||||||| ||||| || |
|
|
| T |
8102783 |
tgatacccatcttggtggtgaagattttgataacagaatggttacccattttgttcaagagtttaagaggaagaacaagaaggatattagcggaaaccct |
8102684 |
T |
|
| Q |
213 |
agggctcttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggta |
312 |
Q |
| |
|
||||| ||||| ||||||||||| || || |||||||| ||||| || || || || || || ||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
8102683 |
agggcacttaggagattgagaaccgcatgtgagagagcgaagagaactctctcatcaaccgcacaaactaccattgagattgattctttgtttgagggtg |
8102584 |
T |
|
| Q |
313 |
ttgacttttacactaccatcactcgtgctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaagtg |
400 |
Q |
| |
|
|||| |||||||| || ||||| ||||| | ||||| || || |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8102583 |
ttgatttttacaccacaatcacccgtgccagatttgaggaacttaacatggatctgttcaggaagtgtatggagcctgttgagaagtg |
8102496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 45 - 400
Target Start/End: Original strand, 8017397 - 8017752
Alignment:
| Q |
45 |
ggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagattttgata |
144 |
Q |
| |
|
||||| ||||||||||| || || |||||||||||||| ||||| ||||| || || ||||| ||||||||||| ||| | || |||||||||||||| | |
|
|
| T |
8017397 |
ggtggtacttttgatgtgtctcttcttactattgaagagggtatttttgaagttaaggctactgctggtgatacccatcttggtggtgaagattttgaca |
8017496 |
T |
|
| Q |
145 |
acaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcga |
244 |
Q |
| |
|
|||| ||||| || ||||||||||| || || ||||||||||| |||||||||||||||||||| || || || ||||| || ||||| || ||||| || |
|
|
| T |
8017497 |
acagaatggttaatcattttgttcaggagtttaagaggaagaacaagaaggatattagtggaaaccctagagcacttaggaggttgaggacagcttgtga |
8017596 |
T |
|
| Q |
245 |
gagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttacactaccatcactcgtgctcgt |
344 |
Q |
| |
|
|||||| ||||| || || || |||||||| ||||| |||||||| |||||||| |||||||||||| |||| |||||||| || ||||| ||||| | |
|
|
| T |
8017597 |
gagagcgaagagaactctctcttctactgcacaaactaccattgagattgattctttgtttgagggtgttgatttttacaccacaatcacccgtgcaaga |
8017696 |
T |
|
| Q |
345 |
tttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaagtg |
400 |
Q |
| |
|
||||| || || |||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
8017697 |
tttgaggaacttaacatggatctgttcagaaagtgtatggagcctgttgagaagtg |
8017752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 39 - 397
Target Start/End: Complemental strand, 39985836 - 39985478
Alignment:
| Q |
39 |
cttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagatt |
138 |
Q |
| |
|
||||||||||| ||||||||||| || | || ||||||||||| |||||||||||||||||||| ||||| || || || ||| | |||||||| |||| |
|
|
| T |
39985836 |
cttggtggtggtacttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagccggagacacccatcttggaggtgaggatt |
39985737 |
T |
|
| Q |
139 |
ttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgc |
238 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||| || || || |||||||| || ||||| ||||| |
|
|
| T |
39985736 |
ttgacaacagaatggtgaaccactttgttcaagagttcaagagaaagaacaagaaggacatcagtggcaaccccagagctcttaggaggttgaggactgc |
39985637 |
T |
|
| Q |
239 |
ttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttacactaccatcactcgt |
338 |
Q |
| |
|
||| || ||||| ||||| || || || |||||||| || |||||||||||||||||||| | ||||| || ||||| || ||| | |||| |||||| |
|
|
| T |
39985636 |
ttgtgaaagagcgaagagaactctctcttctactgcccagaccaccattgaaattgattctctttttgaaggaattgatttctactcccccattactcgt |
39985537 |
T |
|
| Q |
339 |
gctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaa |
397 |
Q |
| |
|
|| | ||||| ||||||||||||||||| ||||| || ||||||||||| |||||||| |
|
|
| T |
39985536 |
gcaagatttgaggagctcaacatggatctctttagaaaatgtatggagccagttgagaa |
39985478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 126 - 265
Target Start/End: Original strand, 8382941 - 8383080
Alignment:
| Q |
126 |
ggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaa |
225 |
Q |
| |
|
||||||||||| || |||||||| || ||||| | |||||| | || |||||||||||| |||| ||||| |||||||| || |||| ||||||||||| |
|
|
| T |
8382941 |
ggaggtgaagacttagataacagaatcgtgaagtactttgttgacgagttcaagaggaagcataataaggacattagtgggaacccaaaggctcttagaa |
8383040 |
T |
|
| Q |
226 |
gattgagaactgcttgcgagagagctaagaggaccctttc |
265 |
Q |
| |
|
| || ||||| ||||||||||| || || ||||| ||||| |
|
|
| T |
8383041 |
ggttaagaacggcttgcgagagggcaaaaaggacactttc |
8383080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 8581805 - 8581664
Alignment:
| Q |
124 |
tgggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttag |
223 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| || ||||| || |||||||| || |||| |||| |||| ||||||||||| || |||| |
|
|
| T |
8581805 |
tgggaggggaagattttgataacagaatggtgaatcactttgtgtcggagttcaagagaaaacataaagaggagattattggaaatccaaaagccattag |
8581706 |
T |
|
| Q |
224 |
aagattgagaactgcttgcgagagagctaagaggaccctttc |
265 |
Q |
| |
|
||| ||||| |||||||| |||||||| || ||||| ||||| |
|
|
| T |
8581705 |
aaggttgaggactgcttgtgagagagcgaaaaggacactttc |
8581664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 7877810 - 7877931
Alignment:
| Q |
138 |
tttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactg |
237 |
Q |
| |
|
||||||||||| ||| |||||||||| || || || |||||||||||||| ||| ||| ||||||| || ||||| ||||| || |||||||||| |
|
|
| T |
7877810 |
tttgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataaagtggacattggtggaaacccgagggcccttaggaggttgagaactg |
7877909 |
T |
|
| Q |
238 |
cttgcgagagagctaagaggac |
259 |
Q |
| |
|
| || ||||| ||||| ||||| |
|
|
| T |
7877910 |
catgtgagagggctaaaaggac |
7877931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 8602167 - 8602139
Alignment:
| Q |
36 |
gatcttggtggtggaacttttgatgtttc |
64 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8602167 |
gatcttggtggtggaacttttgatgtttc |
8602139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 39 - 397
Target Start/End: Original strand, 17716665 - 17717023
Alignment:
| Q |
39 |
cttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagatt |
138 |
Q |
| |
|
||||||||||| ||||||||||| || | || ||||||||||| ||| |||| |||| ||||||||||| || || | ||| | |||||||| |||| |
|
|
| T |
17716665 |
cttggtggtggtacttttgatgtctctttgctaactattgaagagtgtaactttcaggttaaagctacagccggagacgcccatcttggaggtgaggatt |
17716764 |
T |
|
| Q |
139 |
ttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgc |
238 |
Q |
| |
|
|| ||||||| ||||||||||| ||||||| ||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| || ||||| ||||| |
|
|
| T |
17716765 |
ttaataacagaatggtgaaccactttgttcgagagttcaagagaaagaacaagaaggacattagtggcaacccaagagctcttatgaggttgaggactgc |
17716864 |
T |
|
| Q |
239 |
ttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttacactaccatcactcgt |
338 |
Q |
| |
|
||| ||||| || ||||| | || || |||||||| || ||||||||||||||||||| | |||||||| ||||| || || || |||| |||||| |
|
|
| T |
17716865 |
ttgtgagagggcgaagagagctctatcatctactgcccagaccaccattgaaattgattgtctatttgagggaattgatttctatacccccattactcgt |
17716964 |
T |
|
| Q |
339 |
gctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaa |
397 |
Q |
| |
|
|| | ||||||||||||||| ||||||| || ||| | |||||||||| |||||||| |
|
|
| T |
17716965 |
gccagatttgaagagctcaacttggatctcttcagggaatgtatggagcaagttgagaa |
17717023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 39 - 397
Target Start/End: Original strand, 17717926 - 17718287
Alignment:
| Q |
39 |
cttggtggtggaacttttgatgtttcactact---tactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaag |
135 |
Q |
| |
|
||||||||||| ||||||||||| || | || |||||||||||| ||| |||| |||| ||||||||||| || || | ||| | |||||||| | |
|
|
| T |
17717926 |
cttggtggtggtacttttgatgtctctttgctaactactattgaagagtgtaactttcaggttaaagctacagccggagacgcccatcttggaggtgagg |
17718025 |
T |
|
| Q |
136 |
attttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctctta-gaagattgagaa |
234 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| |||| ||||| | |
|
|
| T |
17718026 |
attttaataacagaatggtgaaccactttgttcaagagttcaagagaaagaacaagaaggacattagtggcaacccaagagctcttatgaag-ttgagga |
17718124 |
T |
|
| Q |
235 |
ctgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttacactaccatcac |
334 |
Q |
| |
|
||||||| ||||| || ||||| | || || |||||| | || ||||||||||||||||||| | |||||||| ||||| || || || |||| || |
|
|
| T |
17718125 |
ctgcttgtgagagggcgaagagagctctatcatctacttcccagaccaccattgaaattgattgtctatttgagggaattgatttctatacccccattac |
17718224 |
T |
|
| Q |
335 |
tcgtgctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaa |
397 |
Q |
| |
|
|||||| | ||||||||||||||| ||||||| || ||| | |||||||||| |||||||| |
|
|
| T |
17718225 |
tcgtgccagatttgaagagctcaacttggatctcttcagggaatgtatggagcaagttgagaa |
17718287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 126 - 397
Target Start/End: Original strand, 17622010 - 17622281
Alignment:
| Q |
126 |
ggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaa |
225 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||| || ||||| ||||||| | |
|
|
| T |
17622010 |
ggaggtgaggattttaataacagaatggtgaaccactttgttcaagagttcaagagaaagaacaagaaggacatcagtggcaacccaagagctcttatga |
17622109 |
T |
|
| Q |
226 |
gattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttacac |
325 |
Q |
| |
|
| ||||| |||||||| |||| || ||||| || || || | ||||| |||||||||||||||||||||| | || ||||| ||||| || | | | |
|
|
| T |
17622110 |
ggttgaggactgcttgtgagaaggccaagagaactctatcatttactgtccaaaccaccattgaaattgattgtctattcgagggaattgatttctgctc |
17622209 |
T |
|
| Q |
326 |
taccatcactcgtgctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaa |
397 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
17622210 |
ccccattactcgtgccacatttgaaaagctcaacatggatctctttaggaaatgtatggagcaagttgagaa |
17622281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 126 - 396
Target Start/End: Original strand, 17648106 - 17648376
Alignment:
| Q |
126 |
ggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaa |
225 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||| || |||||||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||||| | |
|
|
| T |
17648106 |
ggaggtgaggattttaataacagaatggtgaatcactttgttcaagtgttcaagagaaagaacaagaaggacattagtggcaacccaagagctcttatga |
17648205 |
T |
|
| Q |
226 |
gattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttacac |
325 |
Q |
| |
|
| ||||| |||||||| |||| || ||||| || || || | |||| |||||||||||||||||||||| | || ||||| ||||| || | | | |
|
|
| T |
17648206 |
ggttgaggactgcttgtgagaaggccaagagaactctatcatttactctccaaaccaccattgaaattgattgtctattcgagggaattgatttctgctc |
17648305 |
T |
|
| Q |
326 |
taccatcactcgtgctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgaga |
396 |
Q |
| |
|
|||| |||||||| | ||||| ||||||||||||||||| |||||||| |||||||||| ||||||| |
|
|
| T |
17648306 |
ctccattactcgtgcaagatttgaggagctcaacatggatctctttaggaaatgtatggagcaagttgaga |
17648376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 72 - 397
Target Start/End: Original strand, 17666694 - 17667019
Alignment:
| Q |
72 |
actattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagattttgataacaggatggtgaaccattttgttcaag |
171 |
Q |
| |
|
||||||||||| |||||| ||| ||| ||||||||| | || || | ||| | |||||||| |||||| ||||||| |||||||| || |||||||||| |
|
|
| T |
17666694 |
actattgaagagggtatcattggggttaaagctacaaccggagacccccatcttggaggtgaggattttaataacagaatggtgaatcactttgttcaag |
17666793 |
T |
|
| Q |
172 |
aattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcgagagagctaagaggaccctttcctctac |
271 |
Q |
| |
|
| ||||| || ||||| || ||||| || ||||| || ||||| ||||||| || ||| | |||||||| ||||| || ||||| | || || ||||| |
|
|
| T |
17666794 |
agttcaaaagaaagaacaacaaggacatcagtggcaacccaagagctcttatgaggttggggactgcttgtgagagggcgaagagagctctatcatctac |
17666893 |
T |
|
| Q |
272 |
tgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttacactaccatcactcgtgctcgttttgaagagctcaacatggatctgttt |
371 |
Q |
| |
|
|||||| ||||||||||||||||| | | || ||||| ||||| || | | | ||| |||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
17666894 |
tgctcagaccaccattgaaattgaatgtctattcgagggaattgatttctgctccttcattactcgtgccacatttgaagagctcaacatggatctcttt |
17666993 |
T |
|
| Q |
372 |
aggaagtgtatggagcctgttgagaa |
397 |
Q |
| |
|
||||| |||||||||| |||||||| |
|
|
| T |
17666994 |
aggaaatgtatggagcaagttgagaa |
17667019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 126 - 397
Target Start/End: Original strand, 17704120 - 17704391
Alignment:
| Q |
126 |
ggaggtgaagattttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaa |
225 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||| | ||||||||||| |||||||| ||||| | |||||| || ||||| | | ||| ||||||| | |
|
|
| T |
17704120 |
ggaggtgaggattttaataacagaatggtgaactactttgttcaagagttcaagagaaagaacaggaaggacatcagtggcgaccaaagagctcttatga |
17704219 |
T |
|
| Q |
226 |
gattgagaactgcttgcgagagagctaagaggaccctttcctctactgctcaaaccaccattgaaattgattcattgtttgagggtattgacttttacac |
325 |
Q |
| |
|
| ||||| |||||||| |||| || ||||| || || || | |||| ||||||||||||||||||| || || || |||| || || || | ||| |
|
|
| T |
17704220 |
ggttgaggactgcttgtgagaaggccaagagaactctatcatttactctccaaaccaccattgaaattgtttgtttattcaagggaatggatttcttcac |
17704319 |
T |
|
| Q |
326 |
taccatcactcgtgctcgttttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaa |
397 |
Q |
| |
|
| ||| |||||||| | ||||||||||||||||||||||| |||| ||| ||||||||| |||| ||||| |
|
|
| T |
17704320 |
catcattactcgtgccagatttgaagagctcaacatggatctctttatgaaatgtatggagactgtcgagaa |
17704391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 17705716 - 17705899
Alignment:
| Q |
39 |
cttggtggtggaacttttgatgtttcactacttactattgaagaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagatt |
138 |
Q |
| |
|
||||||||||| |||||||||| || | || ||| ||||||| || || ||||||| ||||||| | | || || || ||| | |||||||| |||| |
|
|
| T |
17705716 |
cttggtggtgggacttttgatgcctctttgctaacttttgaagagagtgtcgttgaggttaaagctatatccggagacacccatcttggaggtgaggatt |
17705815 |
T |
|
| Q |
139 |
ttgataacaggatggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctctta |
222 |
Q |
| |
|
|| ||||||| ||||||||||| |||||| |||| |||||||| ||||| |||||||| |||||||| || ||| | ||||||| |
|
|
| T |
17705816 |
ttaataacagaatggtgaaccactttgtttaagagttcaagagaaagaagaagaaggacattagtggcaacccatgagctctta |
17705899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 17705997 - 17706049
Alignment:
| Q |
345 |
tttgaagagctcaacatggatctgtttaggaagtgtatggagcctgttgagaa |
397 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||| |||||||| |
|
|
| T |
17705997 |
tttgaagagctcaacatggatctctttaggaaatgtatggagcaagttgagaa |
17706049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 34466906 - 34466991
Alignment:
| Q |
174 |
ttcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcgagagagctaagaggac |
259 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| || || ||| | || || ||||||||||| ||||||| || |||||||| |
|
|
| T |
34466906 |
ttcaagaggaagcataataaggatattagtggaaaccctagagctttgaggaggttgagaactgcgtgcgagaatgcaaagaggac |
34466991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 11209471 - 11209371
Alignment:
| Q |
150 |
atggtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcgagagag |
249 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||||| | || | ||| ||||||||||||||||| || ||||| || ||| |||||||||||||||| |
|
|
| T |
11209471 |
atggtgaaccattttgtgaaagagttcttgaggaaggaaaaaatggacattagtggaaatccaagagcccttaggaggctgaagactgcttgcgagagag |
11209372 |
T |
|
| Q |
250 |
c |
250 |
Q |
| |
|
| |
|
|
| T |
11209371 |
c |
11209371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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