View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_2 (Length: 608)
Name: NF1484_low_2
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 343 - 589
Target Start/End: Complemental strand, 27078114 - 27077868
Alignment:
| Q |
343 |
tgttacaacatgcatgcatgtgaatgtgaatatgtgatgatgataaagtaaaaaagaaccgctatctgcaataaagcatgcagaaaccaacatgcacaac |
442 |
Q |
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| T |
27078114 |
tgttacaacatgcatgcatgtgaatgtgaatatgtgatgatgataaagtaaaaaagaaccgctatctgcaataaagcatgcagaaaccaacatgcacaac |
27078015 |
T |
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| Q |
443 |
ctttcactgataccttaatttcatttttactgaggtagatatattgatcattaggatggaaatttttggcaatattagtaggattcaatttgatcatgtc |
542 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27078014 |
cttttactgataccttaatttcatttttactgaggtagatatattgatcattaggatggaaatttttggcaatattagtaggattcaatttgatcatgtc |
27077915 |
T |
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| Q |
543 |
ccacgttgacatcgacaatactccattaaatatttcagccatgaatc |
589 |
Q |
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| T |
27077914 |
ccacgttgacatcgacaatactccattaaatatttcagccatgaatc |
27077868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 343 - 589
Target Start/End: Original strand, 27200187 - 27200433
Alignment:
| Q |
343 |
tgttacaacatgcatgcatgtgaatgtgaatatgtgatgatgataaagtaaaaaagaaccgctatctgcaataaagcatgcagaaaccaacatgcacaac |
442 |
Q |
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| T |
27200187 |
tgttacaacatgcatgcatgtgaatgtgaatatgtgatgatgataaagtaaaaaagaaccgctatctgcaataaagcatgcagaaaccaacatgcacaac |
27200286 |
T |
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| Q |
443 |
ctttcactgataccttaatttcatttttactgaggtagatatattgatcattaggatggaaatttttggcaatattagtaggattcaatttgatcatgtc |
542 |
Q |
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| T |
27200287 |
cttttactgataccttaatttcatttttactgaggtagatatattgatcattaggatggaaatttttggcaatattagtaggattcaatttgatcatgtc |
27200386 |
T |
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| Q |
543 |
ccacgttgacatcgacaatactccattaaatatttcagccatgaatc |
589 |
Q |
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| T |
27200387 |
ccacgttgacatcgacaatactccattaaatatttcagccatgaatc |
27200433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 72 - 307
Target Start/End: Complemental strand, 27078361 - 27078125
Alignment:
| Q |
72 |
ttaattatttgttggcgtgtaaagagtgagtttatatacgcagaaacttggaccattcatattcattactc-atatagttgatcatgacaagcaatatta |
170 |
Q |
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| T |
27078361 |
ttaattatttgttggcgtgtaaagagtgagtttatatacgcagaaacttggaccattcatattcactactctatatagttgatcatgacaagcaatatta |
27078262 |
T |
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| Q |
171 |
tagactatagagtagggaaaggctgaagctaggtatctaatgagctggatttgacattgacacaaggcaaagattttggcagtggctttagttactgatt |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27078261 |
tagactatagagtagggaaaggctgaagctaggtatctaatgagctggatttgacattgacacaaggcaaagattttggcagtggctttggttactgatt |
27078162 |
T |
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| Q |
271 |
tcaatttcaacaaagtgtgaatgaatgaaatactagt |
307 |
Q |
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| T |
27078161 |
tcaatttcaacaaagtgtgaatgaacgaaatactagt |
27078125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 72 - 307
Target Start/End: Original strand, 27199940 - 27200176
Alignment:
| Q |
72 |
ttaattatttgttggcgtgtaaagagtgagtttatatacgcagaaacttggaccattcatattcattactc-atatagttgatcatgacaagcaatatta |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
27199940 |
ttaattatttgttggcgtgtaaagagtgagtttatatacgcagaaacttggaccattcatattcactactctatatagttgatcatgacaagcaatatta |
27200039 |
T |
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| Q |
171 |
tagactatagagtagggaaaggctgaagctaggtatctaatgagctggatttgacattgacacaaggcaaagattttggcagtggctttagttactgatt |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27200040 |
tagactatagagtagggaaaggctgaagctaggtatctaatgagctggatttgacattgacacaaggcaaagattttggcagtggctttggttactgatt |
27200139 |
T |
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| Q |
271 |
tcaatttcaacaaagtgtgaatgaatgaaatactagt |
307 |
Q |
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| T |
27200140 |
tcaatttcaacaaagtgtgaatgaacgaaatactagt |
27200176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 27078458 - 27078388
Alignment:
| Q |
7 |
tagataattcttgtatattacttctaatgcctttgga-tttgttaaaatgatttattaatgggtagttaat |
76 |
Q |
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| T |
27078458 |
tagataattcttgtatattacttctaatgcctttggattttgttaaaatgatttattaatgggtagttaat |
27078388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 27199843 - 27199913
Alignment:
| Q |
7 |
tagataattcttgtatattacttctaatgcctttgga-tttgttaaaatgatttattaatgggtagttaat |
76 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27199843 |
tagataattcttgtatattacttctaatgcctttggattttgttaaaatgatttattaatgggtagttaat |
27199913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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