View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_23 (Length: 394)
Name: NF1484_low_23
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 41079886 - 41079508
Alignment:
| Q |
1 |
cagactttacttacatcatggctaaccggagggttaacacaaagttaaataagaaacaaactaacaaatcctaaaaatactctaacaaaatattcaaatt |
100 |
Q |
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| T |
41079886 |
cagactttacttacatcatggctaaccggagagttaacacaaaattaaataagaaacaaactaacaaatcctaaaaatactctaacaaaatattcaaatt |
41079787 |
T |
|
| Q |
101 |
taaattttaatgatacctttaaagatttaatttatatacaccgaccatgtgaaacgtttttacacatacatctaaacaaatcactttatgatgccacctt |
200 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41079786 |
taaatcttaatgatacctttaaggatttaatttatatacaccgaccatgtgaaacgtttttacacatacatctaaacaaatcactttatgatgccaccaa |
41079687 |
T |
|
| Q |
201 |
tttgggttagttcctaaaaatgattttattggatgcaaaaaatttacaccatcacttcataattaattctatctataatgctatcttattttatatctaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41079686 |
tttgggttagttcctaaaaatgattttattggatgcacaaaatttacaccatcacttcataattaattctatctataatgctatcttattttatatctaa |
41079587 |
T |
|
| Q |
301 |
acctaaacctaaaaaacgatatctaggcataatattctcaacacttg-ttgcaaccaagtgattacatgaaatgtatca |
378 |
Q |
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| T |
41079586 |
acctaaacctaaaaaacgatatctaggcataatattctcaacacttgtttgcaaccaagtgattacatgaaatgtatca |
41079508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 194
Target Start/End: Complemental strand, 41101432 - 41101307
Alignment:
| Q |
68 |
atcctaaaaatactctaacaaaatattcaaatttaaattttaatgatacctttaaagatttaatttatatacaccgaccatgtgaaacgtttttacacat |
167 |
Q |
| |
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|||||| |||||| |||||||| ||||||||||||||| ||||||||| ||||| ||||||||| ||||||| ||| |||||||| |||||||||| |
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| T |
41101432 |
atcctataaatacactaacaaa-tattcaaatttaaatcttaatgatatctttagggatttaattcatatacattgacggtgtgaaacatttttacacaa |
41101334 |
T |
|
| Q |
168 |
acatctaaacaaatcactttatgatgc |
194 |
Q |
| |
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||||||| ||||| || |||||||| |
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| T |
41101333 |
gcatctaatcaaatgacagtatgatgc |
41101307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 15596399 - 15596460
Alignment:
| Q |
158 |
ttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagttcctaaaa |
219 |
Q |
| |
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| T |
15596399 |
ttttacacatgcatccaatcacatcactttatgatgccagctttttaggttagttcctaaaa |
15596460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 41090991 - 41090959
Alignment:
| Q |
207 |
ttagttcctaaaaatgattttattggatgcaaa |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
41090991 |
ttagttcctaaaaatgattttattggatgcaaa |
41090959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 41101272 - 41101200
Alignment:
| Q |
268 |
tctatctataatgctatcttattttatatctaaacctaaacctaaaaaacgatatctaggcataatattctca |
340 |
Q |
| |
|
||||||||||| | ||| ||| | || ||||||||||||| || ||||||||||| ||||| ||||||||||| |
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| T |
41101272 |
tctatctataacgatattttactataaatctaaacctaaatcttaaaaacgatatttaggcttaatattctca |
41101200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 89
Target Start/End: Complemental strand, 41091119 - 41091088
Alignment:
| Q |
58 |
aaactaacaaatcctaaaaatactctaacaaa |
89 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41091119 |
aaactaacaaatcctaaaaatactctaacaaa |
41091088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 33914122 - 33914028
Alignment:
| Q |
124 |
gatttaatttatatacaccgaccatgtgaaacgtttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagttcctaaa |
218 |
Q |
| |
|
|||||||||| ||||||| ||| |||||| ||||| ||||| |||| || |||||||||| |||||| ||| ||||| |||||||||||||| |
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| T |
33914122 |
gatttaatttctatacacggacatcgtgaaatatttttgcacatgcatccaatcaaatcacttcatgatgtcacatttttaggttagttcctaaa |
33914028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 6914750 - 6914685
Alignment:
| Q |
49 |
ataagaaacaaactaacaaatcctaaaaatactctaacaaaatattcaaatttaaattttaatgata |
115 |
Q |
| |
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| T |
6914750 |
ataaggaacaaactaacaaattgtaaaaacacttcaacaaa-tattcaaatttaaattctaatgata |
6914685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 3660374 - 3660468
Alignment:
| Q |
124 |
gatttaatttatatacaccgaccatgtgaaacgtttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagttcctaaaa |
219 |
Q |
| |
|
|||| ||||||||||||| ||| |||| |||| | | ||||||| ||| || ||||||||| ||||||||| |||||| ||||||||||||||| |
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| T |
3660374 |
gattcaatttatatacactgacaatgtaaaacttctatacacatgcattcaatcaaatcactcaatgatgcca-ctttttaggttagttcctaaaa |
3660468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 27048894 - 27048838
Alignment:
| Q |
156 |
gtttttacacatacatctaaacaaatcactttatgatgccacctttttgggttagtt |
212 |
Q |
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||||||||||| ||| || ||||| ||||||||||||||||||||| |||||||| |
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| T |
27048894 |
gtttttacacacgaatccaatcaaattactttatgatgccacctttttaggttagtt |
27048838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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