View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_24 (Length: 393)
Name: NF1484_low_24
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 31776901 - 31777285
Alignment:
| Q |
18 |
aagtgcaatgtcgtgacaatcaaagttgataagatatcaacaagtaatatagcnnnnnnnnccaattgcacatgggataggt------------------ |
99 |
Q |
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| T |
31776901 |
aagtgcaatgtcgtgacaatcaaagttgataagataccaacaagtaatatagcaaaaaaaaccaattgcacatgggatagttagcatatggagatgagat |
31777000 |
T |
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| Q |
100 |
tccattacttaggtaacaagtaagtaaagggaatttgaaattggaacactacagaagtgaagaaggagtagctagaatttcgacttaaggaatatccatt |
199 |
Q |
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| T |
31777001 |
tccattacttaggtaacaagtaagtaaagggaatttgaaattggaacactacagaagtgaagaaggagtagctagaatttcgacttaaggaatatccatt |
31777100 |
T |
|
| Q |
200 |
caagtgtttaaaaaattaagaagtctcatggttgttgagtctttgtctagcatgaattaatgtgtgttgtgaattaattaatacatgttaaacttgttta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31777101 |
caagtgtttaaaaaattaagaagtctcatggttgttgagtctttgtctagcatgaattaatgtgtgttatgaattaattaatacatgttaaacttgtttg |
31777200 |
T |
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| Q |
300 |
cttgctatgcaagttagttgggttagggatcnnnnnnncaatttcagattccaccttgttaattaattgacaattataaagtatta |
385 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31777201 |
cttgctatgcaagttagttgggttagggat-aaaaaaacaatttcagattccaccttgttaattaattgacaattataaagtatta |
31777285 |
T |
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