View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484_low_25 (Length: 388)
Name: NF1484_low_25
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 4475329 - 4475709
Alignment:
| Q |
18 |
ccaactaatactactactccactaaggtcgtccctaaattgatttcatattatttatgtcaannnnnnnnncctaattagtttttatagtgaatttctat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
4475329 |
ccaactaatactactactccactaaggtcgtccctaaattgatttcatattatttatgtcaatttttttt-cctaattagtttttatagtgattttctat |
4475427 |
T |
|
| Q |
118 |
ttaaaaagtataataacatgtggttacctaaagatatgatgtttcttatagacnnnnnnnnnnnnngagagaagacttttttaggagaatgaacaaggaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
4475428 |
ttaaaaagtataataacatgtggttacctaaagatatgatgtttcttatagacaaaaaaagaaaaagagagaagacttttttaggagaattaacaaggaa |
4475527 |
T |
|
| Q |
218 |
gagg-----------------taataaaagagtaaaa--gtagtgtgtgttatttttggcgtgtgtgatagggaagttgttgtgagaagaaagggtctta |
298 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4475528 |
gaggattaaagaaaaaagaggtaataaaagagtaaaaaagtagtgtgtgttatttttggcgtgtgtgatagggaagttgttgtgagaagaaagggtctta |
4475627 |
T |
|
| Q |
299 |
gaagtggttgaaggtcgataccaatagttgtgtttcattcaattagagcctactttttagtttattgatgccggcctttgct |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4475628 |
gaagtggttgaaggtcgataccaatagttgtgtttcattcaattagagcctactttttagtttattgatgccggcctttgct |
4475709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University