View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_30 (Length: 372)
Name: NF1484_low_30
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 164 - 332
Target Start/End: Complemental strand, 7832698 - 7832530
Alignment:
| Q |
164 |
aaaaatgatcaggactgggttttcatggtagtaatgcttgctttgccgccgtgagtggtggttcttccatgttgttaactatggaaatacttttttctat |
263 |
Q |
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| T |
7832698 |
aaaaatgatcaggactgggttttcatggtagtaatgcttgctttgccgccgtgagtggtggttcttccatgttgttaactatggaaatacttttttctat |
7832599 |
T |
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| Q |
264 |
gtagcattttttgagtagtgtgtttgtatcttgtgatttagaatctctcttggacttttatatggtgca |
332 |
Q |
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| T |
7832598 |
gtagcattttttgagtagtgtgtttgtatcttgtgatttagaatctctcttggacttttatatggtgca |
7832530 |
T |
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Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 7832840 - 7832745
Alignment:
| Q |
22 |
ttgaaggccatcccttcaagctttgaagttcacatcttactggttgtgtctcgacttcatattgttgtgtcttctttgattactggttagtgttca |
117 |
Q |
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| T |
7832840 |
ttgaaggccattccttcaagctttgaagttcacatcttactggctgtgtctcgacttcatattgttgtgtcttctttgattacttgttagtgttca |
7832745 |
T |
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