View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_33 (Length: 364)
Name: NF1484_low_33
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 47 - 348
Target Start/End: Original strand, 33645321 - 33645622
Alignment:
| Q |
47 |
gaataaaaaaggttgttttgttattaggtaatgaaaaataacatttttaaacgttgtatgtctatgttgtgatcaaaacacaagttcgttgattaagtgt |
146 |
Q |
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| T |
33645321 |
gaataaaaaatgttgttttgttattaggtaatgaaaaataacttttttaaacgttgtatgtctatgttgtgatcaaaacacaagttcgttgattaactgt |
33645420 |
T |
|
| Q |
147 |
aatacatggctccatgtattgactacaatagtggctccaagagctattgttaatccgatgcgatgagtattgttgtagtttatttgtactttgagttctc |
246 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33645421 |
aatatatggctccatgtattgactacaatagtggctccaagagctattgttaatccgatgcgatgagtattgttgtag-ttatttgtactttgagttctc |
33645519 |
T |
|
| Q |
247 |
--nnnnnnnggttacaataggaaaatattttgtactttgagttccaacaaatgcatgcttctgatccatttaataggtaatataaacttatctagtgttc |
344 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33645520 |
ttttttttttgttacaataggaaaata-tttgtactttgagttccaacaaatgcatgcttctgatccatttaataggtaatataaacttatctagtgttc |
33645618 |
T |
|
| Q |
345 |
cttc |
348 |
Q |
| |
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|||| |
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| T |
33645619 |
cttc |
33645622 |
T |
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