View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_low_35 (Length: 351)

Name: NF1484_low_35
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_low_35
NF1484_low_35
[»] chr1 (22 HSPs)
chr1 (194-341)||(9451934-9452081)
chr1 (20-149)||(9452126-9452255)
chr1 (26-153)||(26971714-26971839)
chr1 (28-153)||(20200407-20200532)
chr1 (20-153)||(13166110-13166243)
chr1 (28-149)||(20840582-20840703)
chr1 (55-153)||(22891146-22891244)
chr1 (194-288)||(4245881-4245976)
chr1 (20-113)||(13150048-13150141)
chr1 (198-285)||(13165246-13165334)
chr1 (28-149)||(11667221-11667342)
chr1 (28-153)||(24986699-24986824)
chr1 (32-153)||(4246754-4246877)
chr1 (53-150)||(12753779-12753876)
chr1 (198-285)||(26972622-26972709)
chr1 (55-150)||(1626292-1626387)
chr1 (206-285)||(11668092-11668171)
chr1 (198-273)||(14746004-14746080)
chr1 (28-104)||(10339478-10339553)
chr1 (58-104)||(8282685-8282731)
chr1 (28-106)||(25349548-25349625)
chr1 (301-341)||(9431435-9431475)
[»] chr5 (23 HSPs)
chr5 (26-153)||(24190579-24190706)
chr5 (20-151)||(22251351-22251482)
chr5 (20-153)||(22404071-22404204)
chr5 (32-153)||(23419879-23420000)
chr5 (55-153)||(30605036-30605134)
chr5 (28-153)||(23757575-23757700)
chr5 (28-153)||(23823031-23823156)
chr5 (198-285)||(25105644-25105732)
chr5 (198-285)||(25164737-25164825)
chr5 (62-153)||(9421868-9421959)
chr5 (55-153)||(22082036-22082134)
chr5 (198-286)||(22404984-22405073)
chr5 (205-285)||(9422697-9422778)
chr5 (32-153)||(26037494-26037614)
chr5 (55-103)||(23624607-23624655)
chr5 (73-151)||(22245722-22245800)
chr5 (194-248)||(23420780-23420834)
chr5 (28-104)||(20714062-20714137)
chr5 (53-153)||(38406077-38406177)
chr5 (26-67)||(9420671-9420712)
chr5 (20-77)||(22240288-22240345)
chr5 (28-104)||(13941334-13941409)
chr5 (208-285)||(30605923-30605998)
[»] scaffold0185 (2 HSPs)
scaffold0185 (32-153)||(1690-1811)
scaffold0185 (210-285)||(2593-2669)
[»] chr6 (55 HSPs)
chr6 (28-153)||(17235310-17235435)
chr6 (32-153)||(33666507-33666628)
chr6 (20-153)||(23879601-23879734)
chr6 (28-153)||(8464985-8465110)
chr6 (20-153)||(9281020-9281153)
chr6 (28-153)||(13196040-13196165)
chr6 (28-153)||(25970393-25970518)
chr6 (28-153)||(25974833-25974958)
chr6 (28-153)||(19077859-19077984)
chr6 (194-285)||(14258759-14258851)
chr6 (198-290)||(13870518-13870611)
chr6 (28-149)||(19168166-19168287)
chr6 (28-153)||(20653785-20653910)
chr6 (204-282)||(8465896-8465975)
chr6 (26-153)||(17855911-17856038)
chr6 (32-153)||(13869724-13869845)
chr6 (32-153)||(19893990-19894111)
chr6 (20-153)||(21722718-21722850)
chr6 (198-285)||(20558151-20558239)
chr6 (197-287)||(20989986-20990077)
chr6 (28-142)||(12039028-12039142)
chr6 (209-286)||(19077412-19077490)
chr6 (198-286)||(12039904-12039993)
chr6 (35-151)||(19172133-19172248)
chr6 (198-288)||(17855040-17855131)
chr6 (26-153)||(20989106-20989233)
chr6 (198-288)||(33665639-33665730)
chr6 (28-110)||(12385177-12385258)
chr6 (56-153)||(17527230-17527327)
chr6 (198-282)||(19894735-19894820)
chr6 (20-153)||(21705840-21705973)
chr6 (198-285)||(9281931-9282019)
chr6 (198-285)||(13195172-13195260)
chr6 (58-150)||(24542373-24542465)
chr6 (28-153)||(17863792-17863917)
chr6 (198-285)||(25948377-25948465)
chr6 (41-104)||(23882029-23882092)
chr6 (207-285)||(34991214-34991293)
chr6 (28-82)||(20465231-20465285)
chr6 (26-71)||(19100673-19100718)
chr6 (198-285)||(17234440-17234528)
chr6 (204-286)||(17864640-17864723)
chr6 (198-249)||(21717767-21717818)
chr6 (198-249)||(21725603-21725654)
chr6 (55-110)||(25806167-25806222)
chr6 (55-104)||(15930193-15930242)
chr6 (55-104)||(19598446-19598495)
chr6 (198-285)||(15897896-15897984)
chr6 (207-286)||(25805301-25805381)
chr6 (57-104)||(26964900-26964947)
chr6 (58-103)||(21316941-21316986)
chr6 (59-104)||(34639555-34639600)
chr6 (60-128)||(17868275-17868343)
chr6 (60-128)||(17878058-17878126)
chr6 (113-153)||(19100613-19100653)
[»] chr4 (34 HSPs)
chr4 (28-153)||(16384606-16384731)
chr4 (32-153)||(18600982-18601103)
chr4 (20-153)||(23399506-23399639)
chr4 (20-153)||(25117572-25117705)
chr4 (32-153)||(33898331-33898452)
chr4 (198-286)||(16383737-16383826)
chr4 (198-285)||(10190735-10190823)
chr4 (198-286)||(8163630-8163719)
chr4 (26-149)||(28020023-28020146)
chr4 (198-283)||(33899405-33899491)
chr4 (198-285)||(21477957-21478045)
chr4 (198-285)||(25116672-25116760)
chr4 (28-102)||(10724964-10725038)
chr4 (28-102)||(10938733-10938807)
chr4 (206-285)||(15162718-15162798)
chr4 (55-129)||(9069684-9069758)
chr4 (205-286)||(10724107-10724189)
chr4 (205-286)||(10937876-10937958)
chr4 (54-103)||(15699680-15699729)
chr4 (28-150)||(19183001-19183124)
chr4 (198-240)||(28019198-28019240)
chr4 (28-73)||(15161821-15161866)
chr4 (92-153)||(15161866-15161927)
chr4 (58-150)||(33746638-33746731)
chr4 (59-103)||(10718241-10718285)
chr4 (59-103)||(10932010-10932054)
chr4 (198-285)||(23400411-23400499)
chr4 (30-104)||(15623201-15623274)
chr4 (28-129)||(19660156-19660255)
chr4 (58-103)||(31971680-31971725)
chr4 (59-103)||(10683013-10683057)
chr4 (59-103)||(10896653-10896697)
chr4 (58-150)||(33744190-33744282)
chr4 (59-103)||(49975014-49975058)
[»] chr3 (33 HSPs)
chr3 (20-153)||(7028381-7028514)
chr3 (20-153)||(17135455-17135588)
chr3 (20-153)||(18482683-18482816)
chr3 (20-153)||(24196241-24196374)
chr3 (28-153)||(13514936-13515062)
chr3 (32-153)||(13791393-13791514)
chr3 (198-286)||(20748384-20748473)
chr3 (20-153)||(1918554-1918687)
chr3 (20-153)||(23953868-23954001)
chr3 (198-285)||(44452329-44452417)
chr3 (42-153)||(18063539-18063650)
chr3 (28-153)||(20626961-20627086)
chr3 (198-285)||(13790528-13790616)
chr3 (198-285)||(19633736-19633824)
chr3 (38-153)||(15572331-15572446)
chr3 (198-288)||(15636095-15636186)
chr3 (28-110)||(21547542-21547624)
chr3 (198-286)||(1919457-1919546)
chr3 (198-285)||(19532105-19532193)
chr3 (56-153)||(19634594-19634692)
chr3 (28-90)||(28051917-28051979)
chr3 (75-153)||(296157-296235)
chr3 (28-101)||(286219-286291)
chr3 (55-103)||(15674183-15674231)
chr3 (58-110)||(17042108-17042160)
chr3 (55-101)||(6578894-6578940)
chr3 (55-104)||(3551824-3551873)
chr3 (58-103)||(13914544-13914589)
chr3 (58-103)||(13920269-13920314)
chr3 (234-286)||(18035154-18035207)
chr3 (206-285)||(23954788-23954869)
chr3 (59-103)||(8225849-8225893)
chr3 (59-103)||(18477860-18477904)
[»] chr8 (19 HSPs)
chr8 (20-153)||(22485849-22485982)
chr8 (28-153)||(23540725-23540850)
chr8 (28-153)||(33962449-33962574)
chr8 (194-286)||(23541629-23541723)
chr8 (28-153)||(27924771-27924896)
chr8 (28-153)||(33977775-33977900)
chr8 (28-153)||(45136827-45136951)
chr8 (198-287)||(22472629-22472719)
chr8 (198-286)||(22480935-22481024)
chr8 (33-153)||(26537003-26537123)
chr8 (198-285)||(45133513-45133601)
chr8 (204-285)||(24091821-24091903)
chr8 (206-285)||(11221497-11221577)
chr8 (55-129)||(9997237-9997310)
chr8 (204-285)||(27925651-27925733)
chr8 (55-104)||(18622426-18622475)
chr8 (59-103)||(1684721-1684765)
chr8 (75-132)||(25241095-25241152)
chr8 (204-283)||(33976909-33976989)
[»] chr2 (16 HSPs)
chr2 (32-149)||(24789481-24789598)
chr2 (20-149)||(12911212-12911341)
chr2 (19-153)||(23759340-23759474)
chr2 (198-285)||(12910338-12910426)
chr2 (198-285)||(23758474-23758562)
chr2 (76-153)||(22611607-22611684)
chr2 (198-285)||(22610741-22610829)
chr2 (206-288)||(36399025-36399110)
chr2 (28-150)||(21531097-21531218)
chr2 (199-288)||(24790382-24790472)
chr2 (55-104)||(21249543-21249592)
chr2 (58-103)||(27108209-27108254)
chr2 (55-103)||(15329086-15329134)
chr2 (58-103)||(24311201-24311246)
chr2 (58-103)||(27111798-27111843)
chr2 (59-103)||(36397839-36397883)
[»] chr7 (32 HSPs)
chr7 (19-153)||(645849-645982)
chr7 (28-153)||(12326528-12326653)
chr7 (29-153)||(16207200-16207324)
chr7 (28-153)||(15506946-15507071)
chr7 (20-153)||(11520721-11520855)
chr7 (28-153)||(29545459-29545584)
chr7 (28-153)||(4459455-4459580)
chr7 (198-286)||(11521631-11521720)
chr7 (198-285)||(11998728-11998816)
chr7 (33-153)||(20992259-20992379)
chr7 (198-287)||(644980-645070)
chr7 (28-153)||(15438792-15438917)
chr7 (207-285)||(4458588-4458667)
chr7 (206-283)||(11588315-11588393)
chr7 (206-286)||(12325673-12325754)
chr7 (29-129)||(10661602-10661701)
chr7 (204-285)||(13455339-13455421)
chr7 (198-283)||(16208103-16208189)
chr7 (26-137)||(14165892-14166003)
chr7 (28-105)||(26132274-26132350)
chr7 (28-104)||(21261195-21261270)
chr7 (28-104)||(23082095-23082170)
chr7 (58-103)||(9567656-9567701)
chr7 (55-104)||(14927410-14927459)
chr7 (55-104)||(15350876-15350925)
chr7 (55-104)||(23960790-23960839)
chr7 (198-285)||(14165015-14165103)
chr7 (29-89)||(16221892-16221952)
chr7 (55-129)||(42636946-42637020)
chr7 (55-104)||(20924452-20924501)
chr7 (28-104)||(10038049-10038124)
chr7 (204-287)||(16436621-16436705)
[»] scaffold0453 (1 HSPs)
scaffold0453 (20-153)||(1311-1444)
[»] scaffold0103 (2 HSPs)
scaffold0103 (20-153)||(24988-25121)
scaffold0103 (198-285)||(25896-25984)
[»] scaffold0129 (1 HSPs)
scaffold0129 (20-153)||(16221-16354)
[»] scaffold0088 (1 HSPs)
scaffold0088 (32-153)||(37306-37427)
[»] scaffold0037 (2 HSPs)
scaffold0037 (20-152)||(109569-109701)
scaffold0037 (198-286)||(110480-110569)
[»] scaffold0059 (3 HSPs)
scaffold0059 (19-153)||(47700-47835)
scaffold0059 (198-283)||(50315-50401)
scaffold0059 (198-287)||(61696-61786)
[»] scaffold0024 (1 HSPs)
scaffold0024 (21-153)||(159787-159919)
[»] scaffold0259 (2 HSPs)
scaffold0259 (32-153)||(16648-16769)
scaffold0259 (198-283)||(17500-17586)
[»] scaffold0213 (1 HSPs)
scaffold0213 (28-153)||(7897-8022)
[»] scaffold0190 (1 HSPs)
scaffold0190 (29-153)||(15941-16064)
[»] scaffold0226 (6 HSPs)
scaffold0226 (28-153)||(17443-17568)
scaffold0226 (28-153)||(26837-26962)
scaffold0226 (28-149)||(6857-6977)
scaffold0226 (204-285)||(18353-18435)
scaffold0226 (204-285)||(27747-27829)
scaffold0226 (198-284)||(7762-7849)
[»] scaffold0359 (1 HSPs)
scaffold0359 (21-153)||(2606-2737)
[»] scaffold0102 (1 HSPs)
scaffold0102 (198-285)||(36854-36942)
[»] scaffold0333 (1 HSPs)
scaffold0333 (198-287)||(5491-5581)
[»] scaffold0006 (2 HSPs)
scaffold0006 (20-153)||(88462-88593)
scaffold0006 (198-282)||(87588-87672)
[»] scaffold0338 (1 HSPs)
scaffold0338 (198-286)||(16437-16525)
[»] scaffold0069 (1 HSPs)
scaffold0069 (21-110)||(9433-9522)
[»] scaffold1001 (1 HSPs)
scaffold1001 (55-150)||(682-776)
[»] scaffold0035 (1 HSPs)
scaffold0035 (55-100)||(38074-38119)
[»] scaffold0034 (1 HSPs)
scaffold0034 (58-103)||(50258-50303)
[»] scaffold0003 (1 HSPs)
scaffold0003 (204-287)||(26251-26335)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 194 - 341
Target Start/End: Complemental strand, 9452081 - 9451934
Alignment:
Q  194 ctgcttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacatttaaaacaagtgcgctagaatttcaaaaggnnn 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  9452081 ctgcttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacatttaaaacaagtgcgctagaatttcaaaaggaaa 9451982  T
Q  294 nnnngccttattcaaaagaatcattgaaaggtattgctcacaggttct 341  Q
        ||||||||||||||||||||||||||||||||||| ||||||||    
T  9451981 aaaagccttattcaaaagaatcattgaaaggtattgctcgcaggttct 9451934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 9452255 - 9452126
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9452255 gaaccgaagtttcaacatgtgtttaggcgtctctataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgggttctcgcctact 9452156  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaa 149  Q
    |||||||||||| |||||||||||||||||    
T  9452155 tgtacgcgcgcccgttattgtttaaggaaa 9452126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 26971714 - 26971839
Alignment:
Q  26 aagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacg 125  Q
    ||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  26971714 aagtttcaacatgtgtttaggcgtctctggaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcctgagttctcgcctatttgtacg 26971813  T
Q  126 cgcgcctgttattgtttaaggaaacaat 153  Q
    ||| |   ||||||||||||||||||||    
T  26971814 cgctc--tttattgtttaaggaaacaat 26971839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 20200407 - 20200532
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||| ||  ||||||||||||||    
T  20200407 gttccaacatgtgtttaggcatctctgtaagatgttggatacgatgttccaacatcctggcacggttcagtatgcctgagtactttcctacttgtacgcg 20200506  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  20200507 cgccctttattgtttaaggaaacaat 20200532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 13166243 - 13166110
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| |||||||||||||||||||||||||| |  |||||||||||| ||||||| |||||| |||| || |||||||||||||||||||||||||       
T  13166243 gaaccaaagttccaacatgtgtttaggcgtctctggaagatgttggatgcgatgcttcaacatcctggtacggttcagtgtgcctgagttctcgcctgta 13166144  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||| |||||||  ||||||||||||||||||||    
T  13166143 tgtaagcgcgccctttattgtttaaggaaacaat 13166110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 20840582 - 20840703
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||| ||||||||| ||| | ||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||| ||    
T  20840582 gttccaacatatgtttaggcatctctgtaagatgttggatacgatgttccaacatcctgacacagttcagtgtgcctgagttcttgcctacttgtacacg 20840681  T
Q  128 cgcctgttattgtttaaggaaa 149  Q
    ||||  ||||||||||| ||||    
T  20840682 cgccctttattgtttaatgaaa 20840703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 22891146 - 22891244
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||| |||||||||| ||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||    
T  22891146 taagttgttggatactatgttccaacatcctggcacggttcagtgtgcctgagttcttgcctacttgtacgcgcgtcctttattgtttaaggaaacaat 22891244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 288
Target Start/End: Complemental strand, 4245976 - 4245881
Alignment:
Q  194 ctgcttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaaa 288  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| | ||||| |||||||||||| |||||| ||||||||    
T  4245976 ctgcttatcgcgtgatgttgaaacattaatcataacattgcaaacgtcaaaacatcatacataacatattaaaacaagtgtgctagattttcaaaa 4245881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 13150141 - 13150048
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcg 113  Q
    ||||| ||||| |||||||||||||||||||| |  |||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||    
T  13150141 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatgcgatgcttcaacatcctggcacggttcagtgtgcctgagttctcg 13150048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 13165334 - 13165246
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||| | |||||||||||| ||||||||||||    
T  13165334 ttatcgcgtgatgttgtaacattaatcataacatcgcaaacgttaaaacatcatacagaacgtattaaaacaagtgtgctagaatttca 13165246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 11667221 - 11667342
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||| | ||| | ||||||||||||||||||| ||||||||  |||||||||| |||||| ||| ||||  ||||| |||||||||    
T  11667221 gttccaacatgtgtttagacatctctgtaagatgttggatacgatgttccaacatcatggcacagttaagtgtgtctgggttcatgcctatttgtacgcg 11667320  T
Q  128 cgcctgttattgtttaaggaaa 149  Q
      ||  ||||||||||||||||    
T  11667321 gaccctttattgtttaaggaaa 11667342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 24986824 - 24986699
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||| |||||||||| | | ||||   |||| ||||| | |    
T  24986824 gttccaacatgtgtttaggcatctctgtaagatgttggatacaatgttccaacattctggcacggttcagtgtgaccgtgttcatacctatttgtatgtg 24986725  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    | ||  ||||||||||||||||||||    
T  24986724 caccctttattgtttaaggaaacaat 24986699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 4246877 - 4246754
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatac--gatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcg 129  Q
    |||||||||||||| ||||| | |||||||||||||||  ||| ||||||||| ||||||  ||| |||||||||||||||||||||   |||||||| |    
T  4246877 caacatgtgtttagacgtctctgtaagatgttggatacacgatcctccaacatcctggcatggtttagtgtgcctgagttctcgcctgtatgtacgcgtg 4246778  T
Q  130 cctgttattgtttaaggaaacaat 153  Q
     |  ||||||||||||||||||||    
T  4246777 tcctttattgtttaaggaaacaat 4246754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 12753876 - 12753779
Alignment:
Q  53 tataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaac 150  Q
    |||| |||||||||||||||| |||||||| ||||||| |||||||||||||| ||||  |||||||||||||||| |||   ||| |||||||||||    
T  12753876 tatatgatgttggatacgatgttccaacatcctggcacggttcagtgtgcctgggttcgagcctacttgtacgcgcaccttgaattatttaaggaaac 12753779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 26972622 - 26972709
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||  ||||||| ||||||||||||||||| | |||||||  ||||||||| ||||||| |||||||||||||||||||||||||    
T  26972622 ttatcgccggatgttgaaacattaatcgtaacatcg-aaacgttgtaacatcatacagaacatattaaaacaagtgcgctagaatttca 26972709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 1626387 - 1626292
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaac 150  Q
    |||||||||||||| |||| |||||||| |||| |||||||||||||||||  |||  |||||||||||||||||| |  | || |||||||||||    
T  1626387 taagatgttggatatgatgttccaacatcctggaacagttcagtgtgcctggtttcatgcctacttgtacgcgcgctttatcttttttaaggaaac 1626292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 11668092 - 11668171
Alignment:
Q  206 tgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||||||||||| | || ||||||| ||||||| ||||||| || | ||||| |||||||||||||||||||||||||    
T  11668092 tgatgttggaacattgaacggaacattgtaaacgttgaaacatcttaca-aacatattaaaacaagtgcgctagaatttca 11668171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 14746004 - 14746080
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgc 273  Q
    |||||||||||| ||| |||||||||| |||||||||||||  |||||||||||| | ||| | |||||||||||||    
T  14746004 ttatcgcgtgatattgaaacattaatcttaacattgcaaacactaaaacatcatacataacctcttaaaacaagtgc 14746080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 10339478 - 10339553
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||| ||||||| | | | ||||||||||||||||||| ||||||||  || ||| |||||||||||||    
T  10339478 gttccaacatgt-tttaggcatttctgtaagatgttggatacgatgttccaacatcttgacacggttcagtgtgcct 10339553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 8282731 - 8282685
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||||||| |||||||| ||| |||||||||||| ||||    
T  8282731 gatgttggatacgatgttccaacatcctgacacagttcagtgagcct 8282685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 25349548 - 25349625
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctga 106  Q
    |||||||||||| ||||||| | | | |||||||||||||| |||  |||||||| ||||||  |||||||||||||||    
T  25349548 gttccaacatgt-tttaggcatttatgtaagatgttggatatgatattccaacatcctggcatggttcagtgtgcctga 25349625  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 9431475 - 9431435
Alignment:
Q  301 ttattcaaaagaatcattgaaaggtattgctcacaggttct 341  Q
    |||||||||||||||||| ||||||||||||| | ||||||    
T  9431475 ttattcaaaagaatcattaaaaggtattgctcgcgggttct 9431435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 24190706 - 24190579
Alignment:
Q  26 aagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacg 125  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  24190706 aagttccaacatgtgtttaggcgtctttggaagatgttggatacgatgctccaacattctggcacggttcagtgtgcttgagttctcgcctatttgtacg 24190607  T
Q  126 cgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||  ||||||||||||||||||||    
T  24190606 cgcgccccttattgtttaaggaaacaat 24190579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 22251351 - 22251482
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  |    
T  22251351 gaaccaaagtttcaacatgtgtttaggcgtctttgaaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcctgagttctcgcctgtt 22251450  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaaca 151  Q
    ||||||||||||  |||| |||||||||||||    
T  22251451 tgtacgcgcgccctttatcgtttaaggaaaca 22251482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 22404071 - 22404204
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| |||||||||||||||||||||||||| |  |||||||||||||| ||| |||||||| ||||||  ||||||| || |||| ||||||| |  |    
T  22404071 gaaccaaagttccaacatgtgtttaggcgtctctggaagatgttggatacaatgttccaacatcctggcatggttcagtatgtctgatttctcgcatgtt 22404170  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||| ||||| |||||||||||||||||||||    
T  22404171 tgtacgtgcgcccgttattgtttaaggaaacaat 22404204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 23419879 - 23420000
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||||||| | ||||||||||||||| |||||||||||| ||||||| ||||| |||| |||||||||||| |   ||||||||||||    
T  23419879 caacatgtgtttaggcgtctctgtaagatgttggatacaatgctccaacatcctggcacggttcaatgtgtctgagttctcgcatgtatgtacgcgcgcc 23419978  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      |||||| |||||||||||||    
T  23419979 ctttattggttaaggaaacaat 23420000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 30605036 - 30605134
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||  || || ||||||| |||||  ||||||||||||||||||||    
T  30605036 taagatgttggatacgatgttccaacatcctggcacggttcagtgtgcctgagttcatgcttatttgtacgggcgccctttattgtttaaggaaacaat 30605134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 23757575 - 23757700
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||| |||||||| |||||||  ||||||||| ||  ||||  || ||| ||||||||    
T  23757575 gttccaacatgtgtttaggcatctctatatgatgttggatacgatgttccaacatcctggcacgattcagtgtgtctaggttcatgcatacatgtacgcg 23757674  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    | ||  ||||||||||||||||||||    
T  23757675 caccctttattgtttaaggaaacaat 23757700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 23823031 - 23823156
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||| |||||||| |||||||  ||||||||| ||  ||||  || ||| ||||||||    
T  23823031 gttccaacatgtgtttaggcatctctatatgatgttggatacgatgttccaacatcctggcacgattcagtgtgtctaggttcatgcatacatgtacgcg 23823130  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    | ||  ||||||||||||||||||||    
T  23823131 caccctttattgtttaaggaaacaat 23823156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 25105644 - 25105732
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||| ||||||||| |||||||||||||||||||||||||    ||||||||| ||||||| |||||||||||||||||||||||||    
T  25105644 ttatcgtgtgatgttgaaacattaatcgtaacattgcaaacgccgtaacatcatacagaacatattaaaacaagtgcgctagaatttca 25105732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 25164737 - 25164825
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||| ||||||||| |||||||||||||||||||||||||    ||||||||| ||||||| |||||||||||||||||||||||||    
T  25164737 ttatcgtgtgatgttgaaacattaatcgtaacattgcaaacgccgtaacatcatacagaacatattaaaacaagtgcgctagaatttca 25164825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 62 - 153
Target Start/End: Original strand, 9421868 - 9421959
Alignment:
Q  62 ttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||||||||| |||||||| || |||| |||||||| ||||| ||||  |||||||||||||||||||  ||||||||||||||||||||    
T  9421868 ttggatacgatgttccaacatcctagcacggttcagtgagcctgggttcatgcctacttgtacgcgcgccccttattgtttaaggaaacaat 9421959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 22082036 - 22082134
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||||  || |  ||||||| |||||  ||||||||||||||||||||    
T  22082036 taagatgttggatacgatgttccaacatcctggcacggttcagtgtgcttgagttcatgcatgtttgtacgtgcgccctttattgtttaaggaaacaat 22082134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 22404984 - 22405073
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||||| |||||||| ||||||||||||||||||||||| | | |||||||||| | ||| | |||||||||||| |||||||||||||    
T  22404984 ttatcgcatgatgttgaaacattaatcgtaacattgcaaatgctgaaacatcatacataacctattaaaacaagtgtgctagaatttcaa 22405073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 9422697 - 9422778
Alignment:
Q  205 gtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||| ||| || ||||||||||| |||||||||||  | ||||||| ||||||||||||| |||||||||||    
T  9422697 gtgatgttggaacactaaacggaacattgcaaatgttaaaacatctgacagaacatattaaaacaagtgcactagaatttca 9422778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 26037614 - 26037494
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||| ||| | |||||||| |||||||||| |||||||| ||||||  |||||||||||||  ||||  || || |||  ||||| ||    
T  26037614 caacatgtgtttaggcatctctgtaagatgtcggatacgatgttccaacatcctggcatggttcagtgtgcctcggttcatgcatatttg-gcgcgcacc 26037516  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      ||||||||||||||||||||    
T  26037515 ctttattgtttaaggaaacaat 26037494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 23624655 - 23624607
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  23624655 taagatgttggatacgatgttccaacatcctggcacggttcagtgtgcc 23624607  T

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Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 22245722 - 22245800
Alignment:
Q  73 gctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaaca 151  Q
    |||||||||| ||||||| |||||||||||| |||||||||| |  |||||| |||||   ||||| ||||||||||||    
T  22245722 gctccaacatcctggcacggttcagtgtgcccgagttctcgcttgtttgtacccgcgcactttattctttaaggaaaca 22245800  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 23420780 - 23420834
Alignment:
Q  194 ctgcttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacat 248  Q
    |||||||||| |||||| || ||||||||||||||||||| |||||| |||||||    
T  23420780 ctgcttatcgtgtgatgatgaaacattaatcgtaacattgtaaacgtcaaaacat 23420834  T

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Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 20714062 - 20714137
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||| || |||| ||| ||||||||||| ||||||||| |||||||| |||| || ||| |||||||||    
T  20714062 gttccaacatgt-ttcaggcatctctataagatgttagatacgatgttccaacatcctggaacggtttagtgtgcct 20714137  T

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Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 38406177 - 38406077
Alignment:
Q  53 tataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaa 152  Q
    ||||||||||||||||||||| |||| ||| || |||| ||||||||||||     ||| || |  ||||||||| |||  |||||||||||||||||||    
T  38406177 tataagatgttggatacgatgttccagcatcctagcacggttcagtgtgccctgtatcttgcttgtttgtacgcgtgccctttattgtttaaggaaacaa 38406078  T
Q  153 t 153  Q
    |    
T  38406077 t 38406077  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 9420671 - 9420712
Alignment:
Q  26 aagttccaacatgtgtttaggcgtctttataagatgttggat 67  Q
    |||||||||||||||||||||| ||| | |||||||||||||    
T  9420671 aagttccaacatgtgtttaggcatctctgtaagatgttggat 9420712  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 22240288 - 22240345
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctcc 77  Q
    ||||| ||||| ||||||||||||||| |||| |  ||||||||| ||||||||||||    
T  22240288 gaaccaaagtttcaacatgtgtttaggtgtctctgaaagatgttgaatacgatgctcc 22240345  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 13941334 - 13941409
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||| ||||||| | ||| |||||||||||||| |||| |||||||| ||| ||  ||||| |||||||    
T  13941334 gttccaacatgt-tttaggcatttttgtaagatgttggatatgatgttccaacatcctgacatggttcaatgtgcct 13941409  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 30605923 - 30605998
Alignment:
Q  208 atgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||||||||| | || ||||||   |||||| ||||||| || ||||||| |||||||||||||| ||||||||||    
T  30605923 atgttggaacattgaacggaacatt---aacgttgaaacatcttacagaacatattaaaacaagtgcgttagaatttca 30605998  T

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Target: scaffold0185 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 1690 - 1811
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  1690 caacatgtgtttaggcgtctttgtaagatgttggatacgatgttccaacattctggcacggttcagtgtgcctgagttctcgcctatttgtatgcgcgcc 1789  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      ||||||||||||||||||||    
T  1790 ctttattgtttaaggaaacaat 1811  T

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Target: scaffold0185; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 2593 - 2669
Alignment:
Q  210 gttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||| ||||||| | ||||| ||||||||| ||||| |||||| | ||| | |||||||||||| ||||||||||||    
T  2593 gttgaaacattagttgtaactttgcaaacgctaaaaaatcatacataacgtattaaaacaagtgtgctagaatttca 2669  T

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Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 55)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 17235435 - 17235310
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |  |||||||||    
T  17235435 gttccaacatgtgtttaggcgtctctgtaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcctgagttctcgcatgtttgtacgcg 17235336  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    |||| |||||||||||||||||||||    
T  17235335 cgcccgttattgtttaaggaaacaat 17235310  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 33666628 - 33666507
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||  || ||||||| ||    
T  33666628 caacatgtgtttaggcgtctttggaagatgttggatatgatgctccaacatcctggcacggttcagtgtgcctgagttctcgcctgtttttacgcgcacc 33666529  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      ||||||||||||||||||||    
T  33666528 ctttattgtttaaggaaacaat 33666507  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 23879734 - 23879601
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |||  |    
T  23879734 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcctgagttttcacctgtt 23879635  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||| ||| ||  ||||||||||||||||||||    
T  23879634 tgtacacgcaccctttattgtttaaggaaacaat 23879601  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 8464985 - 8465110
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||| ||||||| ||| |||||||||| ||||   ||||||||||||||    
T  8464985 gttccaacatgtgtttaggcctctttttaagatgttggatacaatgttccaacatcctggcacggtttagtgtgcctgggttcattcctacttgtacgcg 8465084  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  |||||||||||| |||||||    
T  8465085 cgccctttattgtttaagaaaacaat 8465110  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 9281020 - 9281153
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  ||||||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||  |    
T  9281020 gaaccaaagtttcaacatgtgtttaggcgtctctgaaagatgttggatatgatgctccaacatcctggcacgattcagtgtgcctgagttctcgcctgtt 9281119  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||| ||||||  | |||||||||| |||||||    
T  9281120 tgtacacgcgcccttcattgtttaagaaaacaat 9281153  T

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Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 13196165 - 13196040
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||  |||||||||||   |    
T  13196165 gttccaacatgtgtttagacatctctataagatgttggatacgatgttccaacatcctggcacggttcagtgtgcctgggttcatgcctacttgtatatg 13196066  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  13196065 cgccctttattgtttaaggaaacaat 13196040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 25970518 - 25970393
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||||||||  |||||| |||||||||||||||||| || |||  |||| || |    
T  25970518 gttccaacatgtgtttaggcgtctctgtaagatgttggatatgatgctccaacatcttggcacggttcagtgtgcctgagttgtcacctgtttgtgcgtg 25970419  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  25970418 cgccctttattgtttaaggaaacaat 25970393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 25974958 - 25974833
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||||||||  |||||| |||||||||||||||||| || |||  |||| || |    
T  25974958 gttccaacatgtgtttaggcgtctctgtaagatgttggatatgatgctccaacatcttggcacggttcagtgtgcctgagttgtcacctgtttgtgcgtg 25974859  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  25974858 cgccctttattgtttaaggaaacaat 25974833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 19077984 - 19077859
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| | ||| ||||||||||||||||||| ||||||||  |||||| |||||||||||||||| ||  |||||| |||||| |    
T  19077984 gttccaacatgtgtttaggcatgtttgtaagatgttggatacgatgttccaacatcttggcacggttcagtgtgcctgagctcatgcctacatgtacgtg 19077885  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  | ||||||||||||||||||    
T  19077884 cgcccttcattgtttaaggaaacaat 19077859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 194 - 285
Target Start/End: Complemental strand, 14258851 - 14258759
Alignment:
Q  194 ctgcttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| || |||||||    
T  14258851 ctgcttatcgcgtgatgttgaaacattaatcgtaacattgcaaacgttaaaacatcataaaaaacatattaaaacaagtgcgttaaaatttca 14258759  T

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Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 290
Target Start/End: Original strand, 13870518 - 13870611
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaaagg 290  Q
    |||||||||||||||| ||||||||||||||||||||||||| | |||||||||  ||||||| ||||||||||||||||||||||||| ||||    
T  13870518 ttatcgcgtgatgttgaaacattaatcgtaacattgcaaacgctgaaacatcattcagaacatattaaaacaagtgcgctagaatttcataagg 13870611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 19168287 - 19168166
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| ||||  ||||||| |||||||||||||||| ||||||| ||| |||||||||| ||||  |||||||||||||||    
T  19168287 gttccaacatgtgtttaggcatctctatagaatgttgggtacgatgctccaacatcctggcacggtttagtgtgcctgggttcatgcctacttgtacgcg 19168188  T
Q  128 cgcctgttattgtttaaggaaa 149  Q
    ||    ||||||||||||||||    
T  19168187 cgttctttattgtttaaggaaa 19168166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 20653910 - 20653785
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| |||||||||||||||  |||| ||||| || |||| || |||||||||| ||| ||||  |||||||| ||||||    
T  20653910 gttccaacatgtgtttaggcatctctataagatgttggatgtgatgttccaagatcctggaacggttcagtgtgtctgggttcatgcctacttttacgcg 20653811  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  20653810 cgccctttattgtttaaggaaacaat 20653785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 8465896 - 8465975
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatt 282  Q
    ||||||||||||||||| | || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8465896 cgtgatgttggaacattgaacggaacattgcaaacgttaaaacatcatatagaacatattaaaacaagtgcgctagaatt 8465975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 17856038 - 17855911
Alignment:
Q  26 aagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacg 125  Q
    |||||||||||| ||||||||||||| |  |||||||||||| ||||||| |||||| || |||| |||||||||||||||||||| || |  |||||||    
T  17856038 aagttccaacatttgtttaggcgtctctggaagatgttggatgcgatgcttcaacatcctagcacggttcagtgtgcctgagttcttgcttgtttgtacg 17855939  T
Q  126 cgcgcctgttattgtttaaggaaacaat 153  Q
     || ||  ||||||||||||||||||||    
T  17855938 tgcaccctttattgtttaaggaaacaat 17855911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 13869724 - 13869845
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||| ||||| ||||||||||||| | ||  |||||||| ||||||| ||||||||||| ||||||||||||||  |||||| || ||    
T  13869724 caacatgtgtttaggcatctttgtaagatgttggatgcaattttccaacatcctggcacggttcagtgtgcttgagttctcgcctatatgtacgtgcacc 13869823  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      |||||||||||||| |||||    
T  13869824 ctttattgtttaaggacacaat 13869845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 19893990 - 19894111
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||  |||| ||| || |    
T  19893990 caacatgtgtttaggcatctctggaagatgttggatacgatgctccaacatcttggcacggttcagtgtgcctgaattctcgcctttttgtgcgcacgac 19894089  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      |||||| |||||||||||||    
T  19894090 ctttattgcttaaggaaacaat 19894111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 21722718 - 21722850
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||||||||||||| ||||||  || | ||||||||||||||| ||| |||||||| ||||||  |||||||||||||| ||||| |||||      
T  21722718 gaaccaaagttccaacatgtggttaggcaactctgtaagatgttggatacaatgttccaacatcctggcatggttcagtgtgcctgggttcttgcctata 21722817  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||| ||||||||  ||||||||||||||||||||    
T  21722818 tgt-cgcgcgccctttattgtttaaggaaacaat 21722850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 20558239 - 20558151
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||||||| | ||||| |||||||||||||||| ||||||||    
T  20558239 ttatcgcgtgatgttggaacattgaacgtaacatcgcaaacgttaaaacatcatacataacatattaaaacaagtgcgctcgaatttca 20558151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 20989986 - 20990077
Alignment:
Q  197 cttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaa 287  Q
    ||||||| |||||||||||||||| |||| ||||||||||| | |||||||||||| ||||||| |||||||||||| ||||||||||||||    
T  20989986 cttatcgtgtgatgttggaacattgatcggaacattgcaaatgctaaaacatcatacagaacatattaaaacaagtgagctagaatttcaaa 20990077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 12039028 - 12039142
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| | ||||||||||||| | ||| ||||||||  |||||| |||||||||| ||| ||||  |||||||| ||||||    
T  12039028 gttccaacatgtgtttaggcatctctgtaagatgttggatgcaatgttccaacatcttggcacggttcagtgtgtctgggttcatgcctacttttacgcg 12039127  T
Q  128 cgcctgttattgttt 142  Q
    ||||  |||||||||    
T  12039128 cgccctttattgttt 12039142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 209 - 286
Target Start/End: Complemental strand, 19077490 - 19077412
Alignment:
Q  209 tgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||||||||| |||||||||||||||| ||||||| |||||| ||||||| ||||||||||||| ||||||||||||    
T  19077490 tgttggaacattgatcgtaacattgcaaatgttaaaatatcatacagaacatattaaaacaagtgcactagaatttcaa 19077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 12039904 - 12039993
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||| |||||| |||||||||| | || ||||||||||||||||||||||| | |||||||| |||||||||||| |||||||||||||    
T  12039904 ttatctcgtgatattggaacattgaacgaaacattgcaaacgttaaaacatcgtgtagaacatattaaaacaagtgtgctagaatttcaa 12039993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 19172248 - 19172133
Alignment:
Q  35 catgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgt 134  Q
    |||||||||| || ||| ||||||||||||| || ||||||||||||| ||||||| ||||| || ||||  ||||  | |||||||||||||||||  |    
T  19172248 catgtgtttatgcatctctataagatgttgggtatgatgctccaacatcctggcacggttcaatgagcctaggttcatg-ctacttgtacgcgcgccctt 19172150  T
Q  135 tattgtttaaggaaaca 151  Q
    |||||||||||||||||    
T  19172149 tattgtttaaggaaaca 19172133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 17855131 - 17855040
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaaa 288  Q
    |||||| ||||||||| ||||||||||||||||| |||||  ||||||||||||| | ||| | |||||||||||| |||||||||||||||    
T  17855131 ttatcgtgtgatgttgaaacattaatcgtaacatcgcaaatattaaaacatcatacaaaacgtattaaaacaagtgtgctagaatttcaaaa 17855040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 20989106 - 20989233
Alignment:
Q  26 aagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacg 125  Q
    |||||||||||||||||||||| ||| | |||||| |||||||||||| || ||||| ||  ||| |||||||||| ||  ||||  |||||||||||||    
T  20989106 aagttccaacatgtgtttaggcatctatgtaagatattggatacgatgttcaaacatcctcacacggttcagtgtgtcttggttcatgcctacttgtacg 20989205  T
Q  126 cgcgcctgttattgtttaaggaaacaat 153  Q
     ||||   ||||||| ||||||||||||    
T  20989206 agcgcgctttattgtataaggaaacaat 20989233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 33665730 - 33665639
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaaa 288  Q
    |||||| ||||||||  ||||||||||||||||||||||||     ||||||||| ||||||| ||||||||||||||||||||||||||||    
T  33665730 ttatcgtgtgatgttaaaacattaatcgtaacattgcaaacaccgtaacatcatacagaacatattaaaacaagtgcgctagaatttcaaaa 33665639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 12385177 - 12385258
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttc 110  Q
    |||||||||||| ||||||| ||| | ||||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||    
T  12385177 gttccaacatgt-tttaggcatctctgtaagatgttggatacgatgttccaacatcctggcacggttcagtgtgcctgggttc 12385258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 17527230 - 17527327
Alignment:
Q  56 aagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||||||||||||| |||| || ||||||| ||||||||||| |||||||||||||  ||  || ||||||  |||||||||||| |||||||    
T  17527230 aagatgttggatacgatgccccaatatcctggcacggttcagtgtgcttgagttctcgcctgtttccacacgcgccctttattgtttaagtaaacaat 17527327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 282
Target Start/End: Original strand, 19894735 - 19894820
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatt 282  Q
    ||||||| |||||||| |||||||||||||| ||| ||||||||  ||||||||| ||||||| |||||||||||| |||||||||    
T  19894735 ttatcgcatgatgttgaaacattaatcgtaatattacaaacgttgtaacatcatacagaacatattaaaacaagtgtgctagaatt 19894820  T

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Target: chr6; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 21705840 - 21705973
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||||||||||||| ||||||  || ||||||||||||||||| ||| ||||| ||  |||||   ||||||||||||| ||||| |||||      
T  21705840 gaaccaaagttccaacatgtggttaggcaactctataagatgttggatacaatgttccaatatcttggcatgcttcagtgtgcctgggttcttgcctata 21705939  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    | || |||||||  |||||||||||| |||||||    
T  21705940 tttatgcgcgccctttattgtttaagtaaacaat 21705973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 9281931 - 9282019
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||| ||||||||||||||| | | |||||||| |||| ||||||||||||| | ||| | |||||||||||||||||||||||||    
T  9281931 ttatcgcttgatgttggaacattgaacttaacattgaaaactttaaaacatcatacataacgtattaaaacaagtgcgctagaatttca 9282019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 13195260 - 13195172
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||||   ||||| |||||||| ||| ||||||||||||    
T  13195260 ttattgcgtgatgttgaaacattaattgtaacattgcaaacgctaaaacatcataccaaacatattaaaacacgtgtgctagaatttca 13195172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 24542465 - 24542373
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaac 150  Q
    |||||||||||||||| |||||||||||||||| ||| ||| |||||| ||||  |||||||||||| ||| |||  |||| |||||||||||    
T  24542465 gatgttggatacgatgttccaacattctggcacggtttagtatgcctgggttcatgcctacttgtacacgcacctagtattatttaaggaaac 24542373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 17863792 - 17863917
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| | |||||||| ||||| |||| |  |||||  | |||| ||||||  |||||| ||||  ||||| ||||||| |    
T  17863792 gttccaacatgtgtttaggcatctctgtaagatgtcggatatgatgttttaacatcgtagcacggttcagactgcctgggttcatgcctatttgtacgtg 17863891  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  17863892 cgccctttattgtttaaggaaacaat 17863917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 25948465 - 25948377
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| ||||||||||||| ||||||||||| | ||||| |||| | ||  | |||||||||||| ||||||||||||    
T  25948465 ttatcgcgtgatgttgaaacattaatcgtatcattgcaaacgctgaaacaacatacataatgtattaaaacaagtgtgctagaatttca 25948377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 23882029 - 23882092
Alignment:
Q  41 tttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||| ||||| ||||||||||||||||||| |||||||| ||| ||| |||||||||||||    
T  23882029 tttaggcatctttgtaagatgttggatacgatgttccaacatcctgacacggttcagtgtgcct 23882092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 34991214 - 34991293
Alignment:
Q  207 gatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| || ||||||||| ||||||||||||   | ||||||| |||||| ||||||||||||||||||    
T  34991214 gatgttggaacattaaacggaacattgcagacgttaaaacatatgacagaacatattaaaataagtgcgctagaatttca 34991293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 20465231 - 20465285
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacat 82  Q
    |||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||    
T  20465231 gttccaacatgtgtttaggcatctctataagatgttggatatgatgttccaacat 20465285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 19100718 - 19100673
Alignment:
Q  26 aagttccaacatgtgtttaggcgtctttataagatgttggatacga 71  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||    
T  19100718 aagttccaacatgtgtttaggcatctctataagatgttggatacga 19100673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 17234528 - 17234440
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||| |||||||||| || |||||||||||||||||||| |   |||||||||| | || || |||||||||||| ||||||||||||    
T  17234528 ttatcacgtgatgttgaaatattaatcgtaacattgcaaatgccgaaacatcatacataatatattaaaacaagtgtgctagaatttca 17234440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 17864640 - 17864723
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||||||| |||||| | ||  |||||| ||||||| ||||||| || | ||||| ||||||||||||||||||||||||||    
T  17864640 cgtgatgttgcaacattgaacggtacattgtaaacgttgaaacatcttacataacatattaaaacaagtgcgctagaatttcaa 17864723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 21717767 - 21717818
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatc 249  Q
    ||||| ||||||||||||||||||| || |||||||||||| ||||||||||    
T  21717767 ttatcacgtgatgttggaacattaaacggaacattgcaaacattaaaacatc 21717818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 21725603 - 21725654
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatc 249  Q
    ||||| ||||||||||||||||||| || |||||||||||| ||||||||||    
T  21725603 ttatcacgtgatgttggaacattaaacggaacattgcaaacattaaaacatc 21725654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 25806222 - 25806167
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttc 110  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||| ||| ||||    
T  25806222 taagatgttggatacgatgttccaacatcctggcacggttcagtgtgtctgggttc 25806167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 15930193 - 15930242
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||| |||||||||||| |||||||| ||||||| |||||||||||||    
T  15930193 taagatattggatacgatgttccaacatcctggcacggttcagtgtgcct 15930242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 19598495 - 19598446
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||||||||||||||| |||||||| ||| ||| |||||||||||||    
T  19598495 taagatgttggatacgatgttccaacatcctgacacggttcagtgtgcct 19598446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 15897896 - 15897984
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| ||| || | |  ||||||||| ||||||||||||| || | ||||| |||||||||||| | ||||||||||    
T  15897896 ttatcgcgtgatgttgaaaccttgaacaaaacattgcatacgttaaaacatcgtacataacatattaaaacaagtgtgttagaatttca 15897984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 25805381 - 25805301
Alignment:
Q  207 gatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||||| |||||| | || ||||||  ||||| | |||||||||| ||||||| |||||||||||||| |||||||||||    
T  25805381 gatgttgaaacattgaacgaaacattataaacgcttaaacatcatacagaacatattaaaacaagtgcgatagaatttcaa 25805301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 26964900 - 26964947
Alignment:
Q  57 agatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||| |||| |||||||||||| ||| |||||||||||||    
T  26964900 agatgttggatatgatgttccaacattctgacacggttcagtgtgcct 26964947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 21316941 - 21316986
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||| |||| |||||||| |||||| |||||||||||||    
T  21316941 gatgttggatatgatgttccaacatcctggcatagttcagtgtgcc 21316986  T

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Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 34639555 - 34639600
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||||||||||| ||||||||  |||||| |||||||||||||    
T  34639555 atgttggatacgatgttccaacatcttggcacggttcagtgtgcct 34639600  T

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Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 17868275 - 17868343
Alignment:
Q  60 tgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgc 128  Q
    |||||||||| ||| ||||||||  || ||| ||||||||||||||  |||  ||||||||||||||||    
T  17868275 tgttggatacaatgttccaacatcgtgacacggttcagtgtgcctggtttcatgcctacttgtacgcgc 17868343  T

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Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 17878058 - 17878126
Alignment:
Q  60 tgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgc 128  Q
    |||||||||| ||| ||||||||  || ||| ||||||||||||||  |||  ||||||||||||||||    
T  17878058 tgttggatacaatgttccaacatcgtgacacggttcagtgtgcctggtttcatgcctacttgtacgcgc 17878126  T

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Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 19100653 - 19100613
Alignment:
Q  113 gcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  19100653 gcctacttgtacgcgcaccctttattgtttaaggaaacaat 19100613  T

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Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 16384731 - 16384606
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||||||| |  ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||  |||||||||    
T  16384731 gttccaacatgtgtttaggcgtctctggaagatgttggatacgatgctccaacatcctgacacagttcagtgtgcctgggttctcgcctgtttgtacgcg 16384632  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  16384631 cgccctttattgtttaaggaaacaat 16384606  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 18600982 - 18601103
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  ||||| | |||||    
T  18600982 caacatgtgtttaggcgtctgtggaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcctgagttctcgcctggttgtatgtgcgcc 18601081  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      ||||||||||||||||||||    
T  18601082 ctttattgtttaaggaaacaat 18601103  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 23399506 - 23399639
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  |||||||||||| ||||||| |||||| ||||||| ||| ||||||||||||||||||| |  |    
T  23399506 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatgcgatgcttcaacatcctggcacggtttagtgtgcctgagttctcgcttgtt 23399605  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||||||  ||||| ||||||||||||||    
T  23399606 tgtacgcgcgccctttattatttaaggaaacaat 23399639  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 25117705 - 25117572
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||| ||||||||||| |  ||||||||||||||||||||||||||| |||||||  |||||  ||| |||||||||||||| |    
T  25117705 gaaccaaagtttcaacatgtatttaggcgtctctggaagatgttggatacgatgctccaacatcctggcacgcttcaggttgcatgagttctcgcctatt 25117606  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||||||||   ||||||||||||||||||||    
T  25117605 tgtacgcgcgctctttattgtttaaggaaacaat 25117572  T

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Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 33898331 - 33898452
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||||||| || | || ||||||| |||||| ||||||||||   ||||||||||||    
T  33898331 caacatgtgtttaggcgtctttggaagatgttagatacgatgctccaacatcctcgtacggttcagtatgcctgcgttctcgcctgtatgtacgcgcgcc 33898430  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      ||||||||||||||||||||    
T  33898431 ctttattgtttaaggaaacaat 33898452  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 16383826 - 16383737
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||||||||||||| |||||||||||||||||| ||||||  | |||||| || ||||||| ||||||||||||||||||||||||||    
T  16383826 ttatcgcgtgatgttgaaacattaatcgtaacattacaaacgccataacatcttacagaacatattaaaacaagtgcgctagaatttcaa 16383737  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 10190823 - 10190735
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||| |||||||| |||||||||| |||||||||||| | | |||||||||| ||||||| |||||||||||||||||||||||||    
T  10190823 ttatcgcttgatgttgaaacattaatcttaacattgcaaatgctgaaacatcatacagaacatattaaaacaagtgcgctagaatttca 10190735  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 286
Target Start/End: Complemental strand, 8163719 - 8163630
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||||||||||||||||||||| | ||||||||   |||||||||||||||||| | ||| | ||||||||||||||||||||||||||    
T  8163719 ttatcgcgtgatgttggaacattgaacgtaacatcataaacgttaaaacatcatacataacgtattaaaacaagtgcgctagaatttcaa 8163630  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 28020146 - 28020023
Alignment:
Q  26 aagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacg 125  Q
    ||||| |||||||||||||||||||| |  ||||||||||||  |||||| |||||| ||||||| ||||||||||  ||||||||| | |  |||| ||    
T  28020146 aagtttcaacatgtgtttaggcgtctctggaagatgttggatgtgatgcttcaacatcctggcacggttcagtgtgaatgagttctcacatgtttgttcg 28020047  T
Q  126 cgcgcctgttattgtttaaggaaa 149  Q
    || |||  ||||||||||||||||    
T  28020046 cgagccctttattgtttaaggaaa 28020023  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 33899405 - 33899491
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaattt 283  Q
    |||||||||||||||  |||||||||| |||||||||||||| | |||||||||| ||||| | |||||||||||| ||||||||||    
T  33899405 ttatcgcgtgatgttaaaacattaatcataacattgcaaacgctgaaacatcatacagaacctattaaaacaagtgtgctagaattt 33899491  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 21478045 - 21477957
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||||||||||||||||||| |  || ||||  ||||| ||||||||||||| ||||| | |||||||||||||||||||||||||    
T  21478045 ttatcgcgtgatgttggaacattgaatgtgacatcacaaacattaaaacatcatacagaacgtattaaaacaagtgcgctagaatttca 21477957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 25116760 - 25116672
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| ||||||||||||||||||| ||| | | |||||| ||| ||||| | |||||||||||| ||||||||||||    
T  25116760 ttatcgcgtgatgttgaaacattaatcgtaacattgtaaatgctgaaacattatacagaacgtattaaaacaagtgtgctagaatttca 25116672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 10725038 - 10724964
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgc 102  Q
    |||||||||| ||| ||||| ||| | ||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  10725038 gttccaacatatgtgtaggcatctctgtaagatgttggatacgatgttccaacatcctggcacagtttagtgtgc 10724964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 10938807 - 10938733
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgc 102  Q
    |||||||||| ||| ||||| ||| | ||||||||||||||||||| |||||||| ||||||||||| |||||||    
T  10938807 gttccaacatatgtgtaggcatctctgtaagatgttggatacgatgttccaacatcctggcacagtttagtgtgc 10938733  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 15162718 - 15162798
Alignment:
Q  206 tgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||||||| ||||| ||||||||| ||||||| || | ||||| |||||||||||  ||||||||||||    
T  15162718 tgatgttggaacattaatcgaaacatcgcaaacgttgaaacatcttacataacatattaaaacaagtatgctagaatttca 15162798  T

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Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 9069758 - 9069684
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcg 129  Q
    ||||||||||||||||||| |||||||| |||| || ||||||||||||||| |||  ||||| |||||| ||||    
T  9069758 taagatgttggatacgatgttccaacatcctggaacggttcagtgtgcctgatttcatgcctatttgtactcgcg 9069684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 10724189 - 10724107
Alignment:
Q  205 gtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||||||||||||| | || |||||| |||||| ||||||||| || | ||||| |||||||||||||| |||||||||||    
T  10724189 gtgatgttggaacattgaacggaacattccaaacggtaaaacatcttacaaaacatattaaaacaagtgcgttagaatttcaa 10724107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 10937958 - 10937876
Alignment:
Q  205 gtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||||||||||||| | || |||||| |||||| ||||||||| || | ||||| |||||||||||||| |||||||||||    
T  10937958 gtgatgttggaacattgaacggaacattccaaacggtaaaacatcttacaaaacatattaaaacaagtgcgttagaatttcaa 10937876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 15699680 - 15699729
Alignment:
Q  54 ataagatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||||    
T  15699680 ataagatgttggatccgatgttccaacatcctggcacagttcagtgtgcc 15699729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 19183001 - 19183124
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgt--gcctgagttctcgcctacttgtacg 125  Q
    |||||||||||| ||||||| ||| | ||||||||||||||||||| ||  |||| ||||||| |||||||||  || |||||||  ||||| ||||||     
T  19183001 gttccaacatgt-tttaggcatctctgtaagatgttggatacgatgttctgacatcctggcacggttcagtgtgcgcatgagttcatgcctatttgtaca 19183099  T
Q  126 cgcgcctgttattgtttaaggaaac 150  Q
    |||||   ||||| |||||||||||    
T  19183100 cgcgctctttattatttaaggaaac 19183124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 28019240 - 28019198
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgt 240  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  28019240 ttatcgcgtgatgttgaaacattaatcgtaacattacaaacgt 28019198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 15161821 - 15161866
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatg 73  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||    
T  15161821 gttccaacatgtgtttaggcatctctgtaagatgttggatacgatg 15161866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 15161866 - 15161927
Alignment:
Q  92 gttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||||||||||| ||||  ||||| |||||| ||||||  ||||||||||||||||||||    
T  15161866 gttcagtgtgcctgggttcaagcctatttgtacacgcgccctttattgtttaaggaaacaat 15161927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 33746731 - 33746638
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttca-gtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaac 150  Q
    |||||||||||||||| || ||||| ||||| | ||||| ||||| ||| ||||  ||||||||||| ||||||||  |||| |||||||||||    
T  33746731 gatgttggatacgatgttctaacatcctggcgcggttcaagtgtgtctgggttcatgcctacttgtatgcgcgccttgtattatttaaggaaac 33746638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 10718285 - 10718241
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||    
T  10718285 atgttggatacgatgttccaacatcctggcacggttcagtgtgcc 10718241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 10932054 - 10932010
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||    
T  10932054 atgttggatacgatgttccaacatcctggcacggttcagtgtgcc 10932010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 23400411 - 23400499
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||| |||||||||| |||||||||| ||||||| |||| |    ||||||||| ||| ||| |||||||||||| ||||||||||||    
T  23400411 ttatcacgtgatgttgaaacattaatcataacattacaaatgccgtaacatcatacagagcatattaaaacaagtgtgctagaatttca 23400499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 15623274 - 15623201
Alignment:
Q  30 tccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||| ||||||| | | | ||||||||||||||||||| |||||||| ||||||| ||| ||| |||||    
T  15623274 tccaacatgt-tttaggcatttctgtaagatgttggatacgatgttccaacatcctggcacggttaagtatgcct 15623201  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 19660255 - 19660156
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    ||||||||||| |||||||| ||  ||| |||| |||||||  ||| ||||||||  |||||  |||||||||||||||||||  ||||| |||||||||    
T  19660255 gttccaacatg-gtttaggcatccatatgagat-ttggatagaatgttccaacatcgtggcatggttcagtgtgcctgagttcatgcctatttgtacgcg 19660158  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 31971725 - 31971680
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||| |||||||| |||||||| || |||||||||||||||||    
T  31971725 gatgttgtatacgatgttccaacatcctagcacagttcagtgtgcc 31971680  T

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Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 10683057 - 10683013
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||    
T  10683057 atgttggatacgatgttccaacatcttggcacggttcagtgtgcc 10683013  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 10896697 - 10896653
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||    
T  10896697 atgttggatacgatgttccaacatcttggcacggttcagtgtgcc 10896653  T

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Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 33744282 - 33744190
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaac 150  Q
    ||||||||||| |||| |||||||| || |||| ||||||| || ||| ||||  |||||| | |||||| ||||  |||| |||||||||||    
T  33744282 gatgttggataagatgttccaacatcctagcacggttcagtctgtctgggttcatgcctacatttacgcgtgccttgtattatttaaggaaac 33744190  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 49975058 - 49975014
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||| |||||||| |||||||  |||||||||||    
T  49975058 atgttggatacgatgttccaacatcctggcacgattcagtgtgcc 49975014  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 7028381 - 7028514
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| |||| ||||||||||||||||||||| |  |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |    
T  7028381 gaaccaaagtgccaacatgtgtttaggcgtctctggaagatgttggatacgatgctccaacattttggcacggttcagtgtgactgagttctcgcctatt 7028480  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||| |||||  ||||| ||||||||||||||    
T  7028481 tgtacgtgcgccctttattatttaaggaaacaat 7028514  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 17135455 - 17135588
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||       
T  17135455 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatatgatgctccaacatcctggcacggttcggtgtgcctgagttctcgcctcta 17135554  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||||||| ||||||||||||||||||||    
T  17135555 tgtacgcgcgccttttattgtttaaggaaacaat 17135588  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 18482683 - 18482816
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||| | |||||| ||| ||| |||||||||| ||||||||||||||  |    
T  18482683 gaaccaaagttccaatatgtgtttaggcgtctctgtaagatgttggatacgatgtttcaacatcctgacacggttcagtgtgtctgagttctcgcctgtt 18482782  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||| ||  ||||||||||||||||||||    
T  18482783 tgtacgcgcaccctttattgtttaaggaaacaat 18482816  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 24196374 - 24196241
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  |||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||  |    
T  24196374 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatgcgatgcttcaacatcctggcacggttcagtgtgcctgagttctcgcctgtt 24196275  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||| ||||  |  ||||||||||||||||||||    
T  24196274 tgtatgcgcatcctttattgtttaaggaaacaat 24196241  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 13514936 - 13515062
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagtt-ctcgcctacttgtacgc 126  Q
    ||||||||||||||||| || ||| | ||||||||||||||||||| |||||||| || |||| ||||||||||| |||||| || |||||||||| ||     
T  13514936 gttccaacatgtgtttaagcatctctgtaagatgttggatacgatgttccaacatcctagcacggttcagtgtgcttgagttacttgcctacttgtgcgt 13515035  T
Q  127 gcgcctgttattgtttaaggaaacaat 153  Q
    |||||  ||||||||||||||||||||    
T  13515036 gcgccctttattgtttaaggaaacaat 13515062  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 13791514 - 13791393
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||| ||||| |  |||||||||||||| ||||| |||||| ||| ||  ||||| |||||||||||||||||||  |||||||||||||    
T  13791514 caacatgtgtttagacgtctctggaagatgttggatacaatgcttcaacatcctgacatggttcaatgtgcctgagttctcgcctgtttgtacgcgcgcc 13791415  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      ||||||||||||||||||||    
T  13791414 ctttattgtttaaggaaacaat 13791393  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 20748384 - 20748473
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  20748384 ttatcgcgtgatgttggaacattgaacgtaacatcgcaaacgttaaaacatcatacaaaacatattaaaacaagtgcgctagaatttcaa 20748473  T

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Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 1918554 - 1918687
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| ||||||||||||||  |||| |  ||||||||| || ||||||| |||||| || |||| ||||||||||||||||||||||| |  |    
T  1918554 gaaccaaagtttcaacatgtgtttagaggtctctggaagatgttgtatgcgatgcttcaacatcctagcacggttcagtgtgcctgagttctcgcatgtt 1918653  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||| |||||  ||||||||||||||||||||    
T  1918654 tgtacgtgcgccctttattgtttaaggaaacaat 1918687  T

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Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 23953868 - 23954001
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||| ||||||||||||||| |  |||||||| ||||| || ||||||||| || |||| ||||||||||||||||||||||| |  |    
T  23953868 gaaccaaagtttcaacgtgtgtttaggcgtctctggaagatgttagatacaatcctccaacatcctagcacggttcagtgtgcctgagttctcgcttgtt 23953967  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    | |||| |||||  ||||||||||||||||||||    
T  23953968 tatacgtgcgccctttattgtttaaggaaacaat 23954001  T

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Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 44452417 - 44452329
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||| ||||||||||||||||||| || |||||||||||||||||||||||  | ||||||| |||||||||||||||||||||||||    
T  44452417 ttatcacgtgatgttggaacattaaacgaaacattgcaaacgttaaaacatctgacagaacatattaaaacaagtgcgctagaatttca 44452329  T

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Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 18063539 - 18063650
Alignment:
Q  42 ttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtt 141  Q
    |||||| ||||| ||||||||||||||||| | |||||||| ||||||| |||||||||||||  ||||| |||||  |||||| |||||| | ||||||    
T  18063539 ttaggcatctttgtaagatgttggatacgacgttccaacatcctggcacggttcagtgtgccttggttcttgcctatatgtacgtgcgcctttcattgtt 18063638  T
Q  142 taaggaaacaat 153  Q
    ||||||||||||    
T  18063639 taaggaaacaat 18063650  T

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Target: chr3; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 20626961 - 20627086
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| | |||||| |||||||| ||| |||||||| ||||||| ||| |||||| ||| ||||  ||||||||||| |      
T  20626961 gttccaacatgtgtttaggcatctctgtaagatattggatacaatgttccaacatcctggcacggtttagtgtgtctgggttcatgcctacttgtatgta 20627060  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  20627061 cgccctttattgtttaaggaaacaat 20627086  T

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Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 13790616 - 13790528
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| |||||||||||||||||||||||||    ||||||||| ||||||| |||||||||||| ||||||||||||    
T  13790616 ttatcgcgtgatgttgaaacattaatcgtaacattgcaaacgccgtaacatcatacagaacatattaaaacaagtgtgctagaatttca 13790528  T

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Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 19633824 - 19633736
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||  | ||||| ||||||||||| |||||||||||||    
T  19633824 ttatcgcatgatgttggaacattgaacgtaacattgcaaacgttaaaacatcatgcaaaacatattaaaacaagtacgctagaatttca 19633736  T

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Target: chr3; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 15572331 - 15572446
Alignment:
Q  38 gtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttat 137  Q
    |||||||||||||| | ||||||||||||||| | |||| |||||  |||||  |||||||||||||||||| ||| ||| |||||||| | ||  ||||    
T  15572331 gtgtttaggcgtctctgtaagatgttggatacaacgctctaacatgttggcaaggttcagtgtgcctgagttatcggctatttgtacgcacaccctttat 15572430  T
Q  138 tgtttaaggaaacaat 153  Q
    ||||||||||||||||    
T  15572431 tgtttaaggaaacaat 15572446  T

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Target: chr3; HSP #16
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 15636095 - 15636186
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaaa 288  Q
    |||||||||||||||| ||||||||||||| ||||| ||||| |||||||||| | ||||| | |||||||||||| |||||||||||||||    
T  15636095 ttatcgcgtgatgttgaaacattaatcgtagcattgaaaacgctaaaacatcaaacagaacgtattaaaacaagtgtgctagaatttcaaaa 15636186  T

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Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 21547624 - 21547542
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttc 110  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||| |||||| | ||| |||||||||||||| ||||||||    
T  21547624 gttccaacatgtgtttatgcatctctataagatgttggatacgatgttccaacttcctgacacagttcagtgtgtctgagttc 21547542  T

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Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 1919457 - 1919546
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||||||||||||| ||||||||| |||||||||||||||   ||||| |||| ||||| | ||||||||||||||||||||||||||    
T  1919457 ttatcgcgtgatgttgaaacattaattgtaacattgcaaacgcggaaacaacatacagaacgtattaaaacaagtgcgctagaatttcaa 1919546  T

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Target: chr3; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 19532105 - 19532193
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| |||||| |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||| ||||    
T  19532105 ttatcgcgtgatgttgaaacattgatcgtaacattgaaaacgctgtaacatcatatagaacatattaaaacaagtgtgctagaaattca 19532193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 19634692 - 19634594
Alignment:
Q  56 aagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcct-acttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||| |||||| ||||||||||||  ||||||| ||||||||||||||||||||| |||   ||||||| ||||| ||||||||||  |||||||||    
T  19634692 aagatgctggatatgatgctccaacaacctggcacggttcagtgtgcctgagttctcacctggtttgtacgtgcgcccgttattgttttcggaaacaat 19634594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 28051979 - 28051917
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcac 90  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||| |||||||| |||||||    
T  28051979 gttccaacatgtgtttaggcatctctgtaagatgttggatacgatgttccaacatcctggcac 28051917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 296235 - 296157
Alignment:
Q  75 tccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||| || ||||||| |||||||||||||| ||||  || || ||||||| |||||  ||||||||||||||||||||    
T  296235 tccaaaatcctggcacggttcagtgtgcctgggttcatgcatatttgtacgtgcgccctttattgtttaaggaaacaat 296157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 286219 - 286291
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtg 101  Q
    |||||||||||| || |||| ||| | ||||||||||||||||||| |||||||| || |||| ||||||||||    
T  286219 gttccaacatgt-ttcaggcatctctgtaagatgttggatacgatgttccaacatcctagcacggttcagtgtg 286291  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 15674183 - 15674231
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||||||||||  |||||||  |||||||||||||||||||    
T  15674183 taagatgttggatacgatgtcccaacatcttggcacagttcagtgtgcc 15674231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 17042108 - 17042160
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttc 110  Q
    |||||||||||||||| ||| |||| ||||||| |||||||||||||| ||||    
T  17042108 gatgttggatacgatgttccgacatcctggcacggttcagtgtgcctgggttc 17042160  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 6578894 - 6578940
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtg 101  Q
    ||||||||||||||||||| |||||||| ||| ||| ||||||||||    
T  6578894 taagatgttggatacgatgttccaacatcctgacacggttcagtgtg 6578940  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 3551824 - 3551873
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||||| |||| ||||||||  |||||| |||||||||||||    
T  3551824 taagatgttggatatgatgttccaacatcgtggcacggttcagtgtgcct 3551873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 13914589 - 13914544
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||||||| |||| ||| || |||||||||||||||||    
T  13914589 gatgttggatacgatgttccatcatcctagcacagttcagtgtgcc 13914544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 13920314 - 13920269
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||||||| || ||||| || |||||||||||||||||    
T  13920314 gatgttggatacgatgttctaacatcctagcacagttcagtgtgcc 13920269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 18035154 - 18035207
Alignment:
Q  234 caaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||||| ||||||| || | ||||| ||||||||||||||||||||||||||    
T  18035154 caaacgtttaaacatcgtacaaaacatattaaaacaagtgcgctagaatttcaa 18035207  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 23954788 - 23954869
Alignment:
Q  206 tgatgttggaacattaatcgtaacattgcaaacgttaaaacatcat-atagaac-atttaaaacaagtgcgctagaatttca 285  Q
    |||||||| ||||||||||||||| ||||||| ||   |||||||| ||||| | | |||||||||||| ||||||||||||    
T  23954788 tgatgttgaaacattaatcgtaactttgcaaatgtcgtaacatcataatagagctaattaaaacaagtgtgctagaatttca 23954869  T

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Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 8225893 - 8225849
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||    
T  8225893 atgttggatacgatgttccaacatcttggcacggttcagtgtgcc 8225849  T

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Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 18477904 - 18477860
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||    
T  18477904 atgttggatacgatgttccaacatcttggcacggttcagtgtgcc 18477860  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 22485982 - 22485849
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| ||||||||||||||| |||| |  || | |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||  |    
T  22485982 gaaccaaagtttcaacatgtgtttaggtgtctctggaaaaagttggatacgatgctccaacatcctggcacagttcagtgtgcctgagttctcgtctgtt 22485883  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||||||  ||||||||||||||||||||    
T  22485882 tgtacgcgcgccctttattgtttaaggaaacaat 22485849  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 23540725 - 23540850
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| | ||||||| ||||||||||| |||||||| ||||||||||| |||||||||| |||   |||||||||||||||    
T  23540725 gttccaacatgtgtttaggcatctctgtaagatgatggatacgatgttccaacatcctggcacagtttagtgtgcctgggtttatgcctacttgtacgcg 23540824  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  23540825 cgccctttattgtttaaggaaacaat 23540850  T

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Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 33962574 - 33962449
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||| ||||||| ||| | ||||||||||||||  ||| |||||||| |||||||||||||||||||||||| ||  | ||  |||||||||    
T  33962574 gttccaacatgtatttaggcatctctgtaagatgttggatattatgttccaacatcctggcacagttcagtgtgcctgaggtcatgtctctttgtacgcg 33962475  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  33962474 cgccctttattgtttaaggaaacaat 33962449  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 194 - 286
Target Start/End: Original strand, 23541629 - 23541723
Alignment:
Q  194 ctgcttatcgcgtgatgttggaacattaatcgt-aacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||||    
T  23541629 ctgcttatcgcgtgatgttggaacattgatcgtaaacattgcaaacgttaaaacatcatacataacatattaaaataagtgcggtagaatttcaa 23541723  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 27924771 - 27924896
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| | | | |||||||||||||| |||| |||||||| ||| |||  ||||||||||||| ||||  ||||||||||||||     
T  27924771 gttccaacatgtgtttaggcatttctgtaagatgttggataagatgttccaacatcctgacacgattcagtgtgcctgggttcatgcctacttgtacgca 27924870  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    |||   ||||||||||||||||||||    
T  27924871 cgctctttattgtttaaggaaacaat 27924896  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 33977900 - 33977775
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||| ||||||| ||| | ||||||||||||||  ||| |||||||| ||| |||||||||||||| ||| ||||  ||||| ||||||| |    
T  33977900 gttccaacatgtatttaggcatctctgtaagatgttggatattatgttccaacatcctgacacagttcagtgtgtctgggttcatgcctatttgtacgtg 33977801  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  33977800 cgccctttattgtttaaggaaacaat 33977775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 45136951 - 45136827
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||  ||| | | |||||||||||| |||| |||||||| ||| ||| ||| ||||||| |||||||| ||||||||||| |||    
T  45136951 gttccaacatgtgtttaggtatctctgttagatgttggatatgatgttccaacatcctgacacggtttagtgtgcttgagttcttgcctacttgta-gcg 45136853  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  45136852 cgccctttattgtttaaggaaacaat 45136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 22472719 - 22472629
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaa 287  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||  |||||||||||||    
T  22472719 ttatcgtgtgatgttgaaacattaatcgtaacatcgcaaacgttaaaacatcatacagaacgtattaaaacaagtgtcctagaatttcaaa 22472629  T

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Target: chr8; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 22480935 - 22481024
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| | ||||| ||||||||||||  ||||||||||||    
T  22480935 ttatcgcgtgatgttgaaacattaatcgtaacatcgcaaacgttaaaatatcatacaaaacatattaaaacaagtgttctagaatttcaa 22481024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 26537123 - 26537003
Alignment:
Q  33 aacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcct 132  Q
    ||||||||||||||| | |   |||||||||||||| |||| ||||||||  |||||| |||||||||| ||  ||||  ||||| ||||||| |||||     
T  26537123 aacatgtgtttaggcatatccgtaagatgttggatatgatgttccaacatcatggcacggttcagtgtgtctaggttcatgcctatttgtacgtgcgcca 26537024  T
Q  133 gttattgtttaaggaaacaat 153  Q
     |||| |||||||||||||||    
T  26537023 cttatggtttaaggaaacaat 26537003  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 45133601 - 45133513
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||| ||||||| ||||||| | |  ||||||||||| ||||||||||| || ||||||| ||||||||||||| |||||||||||    
T  45133601 ttatcgcatgatgttagaacattgaacagaacattgcaaatgttaaaacatcgtagagaacatattaaaacaagtgcactagaatttca 45133513  T

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Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 24091903 - 24091821
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||||||||||||| | |  ||||||  ||||||| ||||||| || ||||||| |||||||||||||||||||||||||    
T  24091903 cgtgatgttggaacattgaacagaacattataaacgttgaaacatcttacagaacatattaaaacaagtgcgctagaatttca 24091821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 11221497 - 11221577
Alignment:
Q  206 tgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||||||||||| | || ||||||| ||||||| ||||||| || | ||||  |||||||||||||||||||||||||    
T  11221497 tgatgttggaacattgaacggaacattgaaaacgtttaaacatcgtacaaaacaaattaaaacaagtgcgctagaatttca 11221577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 9997310 - 9997237
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcg 129  Q
    ||||||||||||||||||| || | |||| |||||| ||||||||||||||| |||  ||||| |||||||||||    
T  9997310 taagatgttggatacgatgttcta-cattttggcacggttcagtgtgcctgatttcatgcctatttgtacgcgcg 9997237  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 27925651 - 27925733
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||| |||||| | || ||||||||| |||||||||||||  | | ||||| ||||||||| |||||||||||||||    
T  27925651 cgtgatgttgaaacattgaacgaaacattgcatacgttaaaacatctgacataacatattaaaacaaatgcgctagaatttca 27925733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 18622475 - 18622426
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||||||||||||||| ||||||||  |||||| |||||||||||||    
T  18622475 taagatgttggatacgatgttccaacatcttggcacggttcagtgtgcct 18622426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 1684765 - 1684721
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||| |||||||||||||||||| || |||||||||||||||||    
T  1684765 atgtttgatacgatgctccaacatcctagcacagttcagtgtgcc 1684721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 25241152 - 25241095
Alignment:
Q  75 tccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcct 132  Q
    ||||||||||||| || ||||||||||||||| |||  ||||| || |||||||||||    
T  25241152 tccaacattctggtacggttcagtgtgcctgaattcatgcctatttatacgcgcgcct 25241095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 33976989 - 33976909
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaattt 283  Q
    ||||||||||||||||| | || |||||| ||||  || ||||||| || | ||||| |||||||||||| ||||||||||    
T  33976989 cgtgatgttggaacattgaacggaacattacaaatattgaaacatcttacaaaacatattaaaacaagtgtgctagaattt 33976909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 24789481 - 24789598
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||| ||| |  ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||    
T  24789481 caacatgtgtttaggcatctctggaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcctgagttctcgcctgtttgtacgcgcgcc 24789580  T
Q  132 tgttattgtttaaggaaa 149  Q
      ||||||||||||||||    
T  24789581 ctttattgtttaaggaaa 24789598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 12911341 - 12911212
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  |||||||||||||||||||| |||||||||| ||| |||||||||| |||||||||||| |  |    
T  12911341 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatacgatgcttcaacattctgacacggttcagtgtgtctgagttctcgcttgtt 12911242  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaa 149  Q
    ||||||||||||  ||||||||||||||||    
T  12911241 tgtacgcgcgccctttattgtttaaggaaa 12911212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 23759474 - 23759340
Alignment:
Q  19 agaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctac 118  Q
    |||||| ||||| |||||||| |||||||||||||  ||||||||||||  |||||| |||||| ||| ||| ||||| |||||||||||||||  ||      
T  23759474 agaaccaaagtttcaacatgtatttaggcgtctttggaagatgttggatgtgatgcttcaacatcctgtcacggttcaatgtgcctgagttctcaactgt 23759375  T
Q  119 ttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||||||||||  ||||||||||||||||||||    
T  23759374 ttgtacgcgcgccctttattgtttaaggaaacaat 23759340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 12910426 - 12910338
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | |||||||||| ||||| | ||||||||||||||||| |||||||    
T  12910426 ttatcgcgtgatgttgaaactttaatcgtaacattgcaaacgctgaaacatcatacagaacgtattaaaacaagtgcgctaaaatttca 12910338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 23758562 - 23758474
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaac-atttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| ||||||||||||||||||||||||  | |||||||||| | ||| | |||||||||||| ||||||||||||    
T  23758562 ttatcgcgtgatgttgaaacattaatcgtaacattgcaaacactgaaacatcatacaaaactaattaaaacaagtgtgctagaatttca 23758474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 22611684 - 22611607
Alignment:
Q  76 ccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||| ||| ||| |||||||||| ||||||||||||||  |||||||||||||  ||||||||||||||||||||    
T  22611684 ccaacatcctgacacggttcagtgtgactgagttctcgcctgtttgtacgcgcgccctttattgtttaaggaaacaat 22611607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 22610829 - 22610741
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| |||||||||||||| |||||||||     ||||||||| ||||||| |||||| ||||||||||||||||||    
T  22610829 ttatcgcgtgatgttgaaacattaatcgtaatattgcaaactccgtaacatcatacagaacatattaaaataagtgcgctagaatttca 22610741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 36399025 - 36399110
Alignment:
Q  206 tgatgttggaacattaatcgtaacattgcaaacgttaaaa-catcata--tagaacatttaaaacaagtgcgctagaatttcaaaa 288  Q
    |||||||| ||||||||||| ||||| ||||| ||||||| |||||||  || |||||||||||||||| ||| ||||||||||||    
T  36399025 tgatgttgaaacattaatcgaaacatcgcaaatgttaaaaacatcatacatataacatttaaaacaagtacgccagaatttcaaaa 36399110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 21531218 - 21531097
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||| || |||| ||| | ||||||||||||||| ||| |||||||| |||| |  |||| ||||||||   |||  ||||  |||||||||    
T  21531218 gttccaacatgt-ttcaggcatctctgtaagatgttggatacaatgttccaacatcctggtatggttcggtgtgccttgtttcatgcctgtttgtacgcg 21531120  T
Q  128 cgcctgttattgtttaaggaaac 150  Q
    ||||| ||||| |||||||||||    
T  21531119 cgccttttattatttaaggaaac 21531097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 288
Target Start/End: Original strand, 24790382 - 24790472
Alignment:
Q  199 tatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaaa 288  Q
    ||||||||||||||| |||||||||||||||||| |||||     |||||| || | ||||| |||||| ||||| |||||||||||||||    
T  24790382 tatcgcgtgatgttgaaacattaatcgtaacattacaaactccgtaacatcgtacaaaacatattaaaataagtgggctagaatttcaaaa 24790472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 21249543 - 21249592
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||||||||||||||| |||||||| ||||||| ||| |||||||||    
T  21249543 taagatgttggatacgatgttccaacatcctggcacggtttagtgtgcct 21249592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 27108254 - 27108209
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||||||| |||||||| ||||||| ||||||||||||    
T  27108254 gatgttggatacgatgttccaacatcctggcacggttcagtgtgcc 27108209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 15329134 - 15329086
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||||||| |||||||| ||||||| |||| |||||||    
T  15329134 taagatgttggatacgatgttccaacatcctggcacggttctgtgtgcc 15329086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 24311201 - 24311246
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||| ||| |||||||| ||||||| ||||||||||||    
T  24311201 gatgttggatacaatgttccaacatcctggcacggttcagtgtgcc 24311246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 27111843 - 27111798
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  27111843 gatgttggatacgatgttccaacatcctggcacggttcaatgtgcc 27111798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 36397839 - 36397883
Alignment:
Q  59 atgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||    
T  36397839 atgttggatacgatgttccaacatcttggcacggttcagtgtgcc 36397883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 645982 - 645849
Alignment:
Q  19 agaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctac 118  Q
    |||||| ||||| ||||||||||||| |||||| || || ||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||      
T  645982 agaaccaaagtttcaacatgtgtttaagcgtctctagaaaatgttggatgcgatgcttcaacatcctggcacggttcagtgtgcctgagttctcgcctgt 645883  T
Q  119 ttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||||| || ||||||||||||||||||||    
T  645882 ttgtacgcgcgtct-ttattgtttaaggaaacaat 645849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 12326653 - 12326528
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||| || ||||  |||||||||||||||    
T  12326653 gttccaacatgtgtttaggcatctctataagatgttggatacgatgttccaacatcctggcacggttcagtgtgcatgggttcatgcctacttgtacgcg 12326554  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    | |   ||||||||||||||||||||    
T  12326553 cactctttattgtttaaggaaacaat 12326528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 16207200 - 16207324
Alignment:
Q  29 ttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgc 128  Q
    ||||||||||||||||||| ||| | |||||||||||||| |||| |||||||| ||||||  |||||||||||||| ||||  ||||||||||||||||    
T  16207200 ttccaacatgtgtttaggcatctctgtaagatgttggatatgatgttccaacatcctggcatggttcagtgtgcctgggttcatgcctacttgtacgcgc 16207299  T
Q  129 gcctgttattgtttaaggaaacaat 153  Q
     ||  ||||||||||||||||||||    
T  16207300 accctttattgtttaaggaaacaat 16207324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 15507071 - 15506946
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| || ||||| ||| ||| ||| ||| |||||| ||||| |||||| ||||||||    
T  15507071 gttccaacatgtgtttaggcatctctataagatgttggatacgatgttcaaacatcctgacacggttaagtatgcctgggttcttgcctacctgtacgcg 15506972  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    |||   ||||||||||||||||||||    
T  15506971 cgctctttattgtttaaggaaacaat 15506946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 11520721 - 11520855
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcct-ac 118  Q
    ||||| ||||| |||||||||||||||||||| |  |||||||||||||| ||||| |||||| ||||||| ||||||||||   ||||||||||||       
T  11520721 gaaccaaagtttcaacatgtgtttaggcgtctatggaagatgttggatacaatgcttcaacatcctggcacggttcagtgtgttcgagttctcgcctgtt 11520820  T
Q  119 ttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||||||||||  ||||||||||||||||||||    
T  11520821 ttgtacgcgcgccctttattgtttaaggaaacaat 11520855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 29545459 - 29545584
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||| ||| | ||||||||||||||| ||| |||||||| || |||  |||||||||| ||| ||||  ||||| |||||||||    
T  29545459 gttccaacatgtgtttaggcatctctgtaagatgttggatacaatgttccaacatcctagcatggttcagtgtgtctgggttcatgcctatttgtacgcg 29545558  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  29545559 cgccctttattgtttaaggaaacaat 29545584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 4459580 - 4459455
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||| ||||||||| ||| | ||||||||||||||| ||| |||||||| || ||||  ||||||||||||  ||||  ||||| |||||||||    
T  4459580 gttccaacatctgtttaggcatctctgtaagatgttggatacaatgttccaacatcctagcacgattcagtgtgcctaggttcatgcctatttgtacgcg 4459481  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  |||||||||| |||||||||    
T  4459480 cgccctttattgtttatggaaacaat 4459455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 11521631 - 11521720
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |  ||||||||||| ||| | ||||||||||||||||||||||||||    
T  11521631 ttatcacgtgatgttgaaacattaatcgtaacattgcaaacgctgtaacatcatatataacttattaaaacaagtgcgctagaatttcaa 11521720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 11998816 - 11998728
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||| ||||||||||||||||||| || |||||||||||||||||||||||  | | ||||| |||||||||||||||||||||||||    
T  11998816 ttatcacgtgatgttggaacattaaacggaacattgcaaacgttaaaacatctgacataacatattaaaacaagtgcgctagaatttca 11998728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 20992379 - 20992259
Alignment:
Q  33 aacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcct 132  Q
    ||||| ||||||||| ||| | |||||||||||||| |||| |||||||| ||||||| |||||||||||||  ||||  ||||| |||||||||| |      
T  20992379 aacatttgtttaggcatctctgtaagatgttggatatgatgttccaacatcctggcacggttcagtgtgcctaggttcatgcctatttgtacgcgcactc 20992280  T
Q  133 gttattgtttaaggaaacaat 153  Q
     ||||||||||||||||||||    
T  20992279 tttattgtttaaggaaacaat 20992259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 645070 - 644980
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaa 287  Q
    |||||||||||||||| ||||||| | ||||||||||||||| | |||||||||| ||||| | |||||||||||||||||||||| ||||    
T  645070 ttatcgcgtgatgttgaaacattagttgtaacattgcaaacgattaaacatcatacagaacgtattaaaacaagtgcgctagaattccaaa 644980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 15438917 - 15438792
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||| ||||||||||||||| ||| | ||||||||||||||||||| |  ||||| ||| ||| ||| |||||||||| ||||| |||||| |||||||     
T  15438917 gttcaaacatgtgtttaggcatctctgtaagatgttggatacgatgtttaaacatcctgacacggttaagtgtgcctgggttcttgcctacctgtacgca 15438818  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    | |   ||||||||||||||||||||    
T  15438817 cactctttattgtttaaggaaacaat 15438792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 4458667 - 4458588
Alignment:
Q  207 gatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| || |||||||||||||||||||||||  | ||||||| |||||||||||||||| ||||||||    
T  4458667 gatgttggaacattaaacggaacattgcaaacgttaaaacatctgacagaacatattaaaacaagtgcgctcgaatttca 4458588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 11588393 - 11588315
Alignment:
Q  206 tgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaattt 283  Q
    |||||||| ||||||||||||||||||||||||||   ||||||||| | ||||| |||||||||||||||||||||||    
T  11588393 tgatgttgaaacattaatcgtaacattgcaaacgtcgtaacatcatacataacatattaaaacaagtgcgctagaattt 11588315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 12325754 - 12325673
Alignment:
Q  206 tgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||||||||||||| | || ||||||||||| |||||||||||||| ||||||| |||||||||||||  |||||||||||    
T  12325754 tgatgttggaacattgaacggaacattgcaaatgttaaaacatcatacagaacatcttaaaacaagtgcattagaatttcaa 12325673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 10661701 - 10661602
Alignment:
Q  29 ttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgc 128  Q
    ||||||||||| ||||||| | | | ||||||||||||||||||| |||||||| || |||| ||||||||||||||| |||  ||||| ||||||||||    
T  10661701 ttccaacatgt-tttaggcatttatgtaagatgttggatacgatgttccaacatcctagcacggttcagtgtgcctgatttcatgcctatttgtacgcgc 10661603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 13455339 - 13455421
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||||||||||||| | |||||||| | |||||||||||||||||| ||||||| ||||||||| |  ||||||||||||    
T  13455339 cgtgatgttggaacatttaacgtaacatcgaaaacgttaaaacatcatacagaacatattaaaacaaatttgctagaatttca 13455421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 16208103 - 16208189
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaattt 283  Q
    |||| |||||||||||||||||| | || |||||| |||| |||||||||||||| | ||||| |||||||||||| ||||||||||    
T  16208103 ttattgcgtgatgttggaacattgaacgaaacattacaaatgttaaaacatcatacataacatattaaaacaagtgtgctagaattt 16208189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 14166003 - 14165892
Alignment:
Q  26 aagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacg 125  Q
    ||||||||||||||| ||||||  || ||||||||||||||||| |||  ||||||| || ||| || | |||||||||| ||||  |||||  ||||||    
T  14166003 aagttccaacatgtggttaggcaactctataagatgttggatacaatgtcccaacatcctagcatagctaagtgtgcctgggttcatgcctatatgtacg 14165904  T
Q  126 cgcgcctgttat 137  Q
    |||||| |||||    
T  14165903 cgcgcccgttat 14165892  T

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Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 26132274 - 26132350
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctg 105  Q
    |||||||||||| || |||| ||| | |||||||||||||| |||| |||||||| ||||||| ||||||||||||||    
T  26132274 gttccaacatgt-ttcaggcatctctgtaagatgttggatatgatgttccaacatcctggcacggttcagtgtgcctg 26132350  T

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Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 21261270 - 21261195
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||| ||||||| | | | |||||||||||||| |||| |||||||| ||||||| |||||||||||||    
T  21261270 gttccaacatgt-tttaggcatttctgtaagatgttggatatgatgttccaacatcctggcacggttcagtgtgcct 21261195  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 23082095 - 23082170
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||| ||||||| | | | |||||||||||||| |||| |||||||| ||||||| |||||||||||||    
T  23082095 gttccaacatgt-tttaggcatttctgtaagatgttggatatgatgttccaacatcctggcacggttcagtgtgcct 23082170  T

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Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 9567701 - 9567656
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||||||| |||||||| || |||||||||||||||||    
T  9567701 gatgttggatacgatgttccaacatcctagcacagttcagtgtgcc 9567656  T

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Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 14927459 - 14927410
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||||||||||||||| |||||||| ||||||| ||| |||||||||    
T  14927459 taagatgttggatacgatgttccaacatcctggcacggtttagtgtgcct 14927410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 15350925 - 15350876
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||||||||||||||| |||||||| ||||||| ||| |||||||||    
T  15350925 taagatgttggatacgatgttccaacatcctggcacggtttagtgtgcct 15350876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 23960839 - 23960790
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||||||||||||||| |||||||| |||||||  ||||||||||||    
T  23960839 taagatgttggatacgatgttccaacatcctggcacgattcagtgtgcct 23960790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 14165103 - 14165015
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaac-atttaaaacaagtgcgctagaatttca 285  Q
    ||||||| |||||||| ||||||||||  |||||| |||||||   |||||||||  |||| | |||||||||||| ||||||||||||    
T  14165103 ttatcgcatgatgttgaaacattaatcacaacattacaaacgtcgtaacatcatacggaactaattaaaacaagtgtgctagaatttca 14165015  T

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Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 16221892 - 16221952
Alignment:
Q  29 ttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggca 89  Q
    ||||||||||||||  ||| ||| | ||||||||||||||||||| |||||||| ||||||    
T  16221892 ttccaacatgtgttctggcatctctgtaagatgttggatacgatgttccaacatcctggca 16221952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 42637020 - 42636946
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcg 129  Q
    |||||||||| |||||||| |||||| | ||||||| |||||||||| |||  |||  ||||| |||||||||||    
T  42637020 taagatgttgaatacgatgttccaacgtcctggcacggttcagtgtgtctgctttcatgcctatttgtacgcgcg 42636946  T

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Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 20924452 - 20924501
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    ||||||||||||||||||| |||||||| ||||||   ||||||||||||    
T  20924452 taagatgttggatacgatgttccaacatcctggcaagattcagtgtgcct 20924501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 10038049 - 10038124
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcct 104  Q
    |||||||||||| ||||||| | | | ||||||||||||||  ||| |||||||| ||||||  |||||||||||||    
T  10038049 gttccaacatgt-tttaggcatttctgtaagatgttggatataatgttccaacatactggcatggttcagtgtgcct 10038124  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 16436705 - 16436621
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacattt-aaaacaagtgcgctagaatttcaaa 287  Q
    ||||||||||||| | | | || ||||||  ||||||| ||||||| || ||||||||| ||||||| | |||||||||||||||    
T  16436705 cgtgatgttggaaaaatgaacggaacattataaacgttgaaacatcttacagaacattttaaaacaattacgctagaatttcaaa 16436621  T

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Target: scaffold0453 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 1311 - 1444
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  ||||||||||||| ||||||||||||| || |||  |||||||||||||||||||||||||  |    
T  1311 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatatgatgctccaacatcctagcatggttcagtgtgcctgagttctcgcctgtt 1410  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||| ||  ||||||||||||||||||||    
T  1411 tgtacgcgcaccctttattgtttaaggaaacaat 1444  T

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Target: scaffold0103 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 24988 - 25121
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||  |    
T  24988 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatacgatgctccaacatcctggcacggttcagtgtgcctaagttctcgcctgtt 25087  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||  |||||  ||||| ||||||||||||||    
T  25088 tgtacatgcgccctttattatttaaggaaacaat 25121  T

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Target: scaffold0103; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 285
Target Start/End: Original strand, 25896 - 25984
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||||| ||||||||||||| ||||||||||| | |||||||||| ||||| | ||||||||||| |||||||||||||    
T  25896 ttatcgcgtgatgttgaaacattaatcgtagcattgcaaacgctgaaacatcatacagaacgtattaaaacaagtacgctagaatttca 25984  T

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Target: scaffold0129 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 16354 - 16221
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| |||||  ||||||||||||||||||| |  |||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||  ||  |    
T  16354 gaaccaaagtttgaacatgtgtttaggcgtctctggaagatgttggatacgatgttccaacatcctggcacggttcagtgtgcctgagttctcttctgtt 16255  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    ||||||||| ||  ||||||||||||||||||||    
T  16254 tgtacgcgcaccctttattgtttaaggaaacaat 16221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 32 - 153
Target Start/End: Complemental strand, 37427 - 37306
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||||||| | ||| ||||||||||| ||| |||||||| ||| ||| ||||||||||||| |||||||||||| ||||| ||||| |    
T  37427 caacatgtgtttaggcgtctctgtaaaatgttggatacaatgttccaacatcctgacacggttcagtgtgcctaagttctcgcctatttgtaggcgcgtc 37328  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      ||||||||||||||||||||    
T  37327 ctttattgtttaaggaaacaat 37306  T

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Target: scaffold0037 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 109569 - 109701
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||| |||||||||||||||||||| |  |||||||| ||| ||||||| |||||| |||| || ||| |||||| ||||||||||||||  |    
T  109569 gaaccaaagtttcaacatgtgtttaggcgtctctggaagatgttagatgcgatgcttcaacatcctggaacggtttagtgtgtctgagttctcgcctgtt 109668  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaa 152  Q
    ||||||||||||  |||||||||||||||||||    
T  109669 tgtacgcgcgccctttattgtttaaggaaacaa 109701  T

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Target: scaffold0037; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 110480 - 110569
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    |||||| ||||||||| |||||||||||||||||||||| || | |||||||||| | ||| | |||||||||||||| || ||||||||    
T  110480 ttatcgagtgatgttgaaacattaatcgtaacattgcaatcgctgaaacatcatacataacgtattaaaacaagtgcggtaaaatttcaa 110569  T

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Target: scaffold0059 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 47700 - 47835
Alignment:
Q  19 agaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgc-cta 117  Q
    |||||| || || |||||||||||||||||||| |  ||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||  |     
T  47700 agaaccaaaatttcaacatgtgtttaggcgtctctggaagatgttggatacgatactccaacatcctggcacggttcagtgtgcctgagttctcgcggtg 47799  T
Q  118 cttgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
     |||||||||||||  || ||||||||| |||||||    
T  47800 tttgtacgcgcgccctttgttgtttaagaaaacaat 47835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 50315 - 50401
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaattt 283  Q
    |||||||||||||||| |||||||||||||||||||||||||    ||||||||| ||||| | |||||||||||| ||||||||||    
T  50315 ttatcgcgtgatgttgaaacattaatcgtaacattgcaaacgccttaacatcatacagaacgtattaaaacaagtgtgctagaattt 50401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 61696 - 61786
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaa 287  Q
    |||||||||||||||| || ||||||||||||||||||||||    ||||||||| | ||||| ||||||||| || ||||||||||||||    
T  61696 ttatcgcgtgatgttgaaatattaatcgtaacattgcaaacgccgtaacatcatacaaaacatattaaaacaaatgtgctagaatttcaaa 61786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 159919 - 159787
Alignment:
Q  21 aaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctactt 120  Q
    |||| ||||| |||||||||||||||||||| |  ||||||||||||| ||||| ||||||| ||||||| || ||||||  ||||||||||||||  ||    
T  159919 aaccaaagtttcaacatgtgtttaggcgtctctggaagatgttggatatgatgccccaacatcctggcacggtccagtgtctctgagttctcgcctgttt 159820  T
Q  121 gtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||| ||| ||  ||||||||||||||||||||    
T  159819 gtacacgcaccctttattgtttaaggaaacaat 159787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 16648 - 16769
Alignment:
Q  32 caacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcc 131  Q
    |||||||||||||||| ||||| ||||||||||||||||||| || ||||| ||| ||  ||||||||||||||| |||  || |||||||| ||| |||    
T  16648 caacatgtgtttaggcatctttgtaagatgttggatacgatgatctaacatcctgacatggttcagtgtgcctgatttcatgcatacttgtaagcgtgcc 16747  T
Q  132 tgttattgtttaaggaaacaat 153  Q
      ||||||||||||||||||||    
T  16748 ctttattgtttaaggaaacaat 16769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 17500 - 17586
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaattt 283  Q
    |||||||||||| ||| |||||| | |  ||||||||||||||||||||||| || |||||||  ||||||||||||||||||||||    
T  17500 ttatcgcgtgattttgaaacattgaactgaacattgcaaacgttaaaacatcgtacagaacatactaaaacaagtgcgctagaattt 17586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 7897 - 8022
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    ||||||||||||||||| || ||| |||||||||||| |||||||| || ||||| | ||||| |||||||||||||| ||||  ||||| ||||||||     
T  7897 gttccaacatgtgtttaagcatctctataagatgttgcatacgatgttcgaacatcccggcactgttcagtgtgcctgggttcatgcctatttgtacgcc 7996  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    |||   ||||||||||||||||||||    
T  7997 cgctctttattgtttaaggaaacaat 8022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 15941 - 16064
Alignment:
Q  29 ttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgc 128  Q
    |||||||| |||||||| | ||| | ||||||||||||||||||| |||||||| ||||||| |||| ||||||||| ||||   |||||||||||| ||    
T  15941 ttccaacacgtgtttag-catctctgtaagatgttggatacgatgttccaacatcctggcacggttcggtgtgcctgggttcattcctacttgtacgtgc 16039  T
Q  129 gcctgttattgtttaaggaaacaat 153  Q
    ||   ||||||||||||||||||||    
T  16040 gctctttattgtttaaggaaacaat 16064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 17443 - 17568
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||  ||| | ||||||||| |||| |||| |||||||| ||  ||| |||||||||||||||||||  || || ||||| | |    
T  17443 gttccaacatgtgtttaggtatctctgtaagatgttagatatgatgttccaacatcctaccacggttcagtgtgcctgagttcatgcatatttgtatgtg 17542  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  17543 cgccctttattgtttaaggaaacaat 17568  T

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Target: scaffold0226; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 26837 - 26962
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcg 127  Q
    |||||||||||||||||||  ||| | ||||||||| |||| |||| |||||||| ||  ||| |||||||||||||||||||  || || ||||| | |    
T  26837 gttccaacatgtgtttaggtatctctgtaagatgttagatatgatgttccaacatcctaccacggttcagtgtgcctgagttcatgcatatttgtatgtg 26936  T
Q  128 cgcctgttattgtttaaggaaacaat 153  Q
    ||||  ||||||||||||||||||||    
T  26937 cgccctttattgtttaaggaaacaat 26962  T

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Target: scaffold0226; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 28 - 149
Target Start/End: Original strand, 6857 - 6977
Alignment:
Q  28 gttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattc-tggcacagttcagtgtgcctgagttctcgcctacttgtacgc 126  Q
    |||||||||||||||||| | ||||| |||||| ||||||| |||| |||||||| | |||||| |||||||||| ||| ||||  ||||| ||||||||    
T  6857 gttccaacatgtgtttagccatctttgtaagattttggatatgatgttccaacatccttggcacggttcagtgtgtctgggttcatgcctatttgtacgc 6956  T
Q  127 gcgcctgttattgtttaaggaaa 149  Q
    || ||| ||||||||||||||||    
T  6957 gc-cct-ttattgtttaaggaaa 6977  T

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Target: scaffold0226; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 18353 - 18435
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||| || | ||  |||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  18353 cgtgatgttggaacgttgaacgggacattgcaaacgttaaaacatcttacagaacatattaaaacaagtgcgctagaatttca 18435  T

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Target: scaffold0226; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 27747 - 27829
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    |||||||||||||| || | ||  |||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  27747 cgtgatgttggaacgttgaacgggacattgcaaacgttaaaacatcttacagaacatattaaaacaagtgcgctagaatttca 27829  T

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Target: scaffold0226; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 284
Target Start/End: Original strand, 7762 - 7849
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttc 284  Q
    ||||| |||||| |||||||||| | | | ||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||||    
T  7762 ttatctcgtgatattggaacattgaacatgacattgcaaacgttaaatcatcttacagaacatattaaaacaagtgcgctagaatttc 7849  T

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Target: scaffold0359 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 2737 - 2606
Alignment:
Q  21 aaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctactt 120  Q
    |||| ||||| |||||||| || |||||| | |  ||||||||| || ||||||| ||||||  |||||| |||||||||||||||||||||| ||  ||    
T  2737 aaccaaagtttcaacatgtattcaggcgtatcttgaagatgttgtat-cgatgctacaacatcttggcacggttcagtgtgcctgagttctcgactgttt 2639  T
Q  121 gtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||| ||||  ||||||||||||||||||||    
T  2638 gtacgcacgccctttattgtttaaggaaacaat 2606  T

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Target: scaffold0102 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 36942 - 36854
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttca 285  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||  |||||||||||    
T  36942 ttatcgcatgattttgaaacattaatcgtaacattgcaaacgtcgtaacatcatatagaacatattaaaacaagtgtcctagaatttca 36854  T

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Target: scaffold0333 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 5581 - 5491
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaaa 287  Q
    |||||||||||||||| ||||||||| |||||||||||||||    || |||||| ||||||| ||||||||||||||||| |||||||||    
T  5581 ttatcgcgtgatgttgaaacattaattgtaacattgcaaacgccgtaatatcatacagaacatattaaaacaagtgcgctaaaatttcaaa 5491  T

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Target: scaffold0006 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 88593 - 88462
Alignment:
Q  20 gaaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctact 119  Q
    ||||| ||||||||||||||| |||||| ||| ||  ||||||||||||| ||| |||||||| ||| ||  |||||||||||||||||||  || ||      
T  88593 gaaccaaagttccaacatgtggttaggcatctgta--agatgttggatacaatgttccaacatcctgacatggttcagtgtgcctgagttcatgcatata 88496  T
Q  120 tgtacgcgcgcctgttattgtttaaggaaacaat 153  Q
    |||||||||||   ||||||||||||| ||||||    
T  88495 tgtacgcgcgctctttattgtttaagggaacaat 88462  T

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Target: scaffold0006; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 87672 - 87588
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacatttaaaacaagtgcgctagaatt 282  Q
    ||||| |||||||||||||||||||  | ||||||| | || |||| |||||  | |||||||||||||||||||| ||||||||    
T  87672 ttatcacgtgatgttggaacattaaatggaacattgtagacattaatacatctgacagaacatttaaaacaagtgcactagaatt 87588  T

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Target: scaffold0338 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 286
Target Start/End: Original strand, 16437 - 16525
Alignment:
Q  198 ttatcgcgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacat-ttaaaacaagtgcgctagaatttcaa 286  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| | ||| | ||||||||||||| || |||||||||    
T  16437 ttatcgcgtgatgttggaa-attaaacgtaacatcgcaaacgttaaaacatcatacataacgtattaaaacaagtgcccttgaatttcaa 16525  T

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Target: scaffold0069 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 9522 - 9433
Alignment:
Q  21 aaccgaagttccaacatgtgtttaggcgtctttataagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttc 110  Q
    |||| |||||||||||| ||||||||| ||| | |||| |||||||||| ||| |||||| |  |||||| |||||||||||||||||||    
T  9522 aaccaaagttccaacatatgtttaggcatctctgtaaggtgttggatacaatgttccaacttcttggcacggttcagtgtgcctgagttc 9433  T

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Target: scaffold1001 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 776 - 682
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgtgcctgagttctcgcctacttgtacgcgcgcctgttattgtttaaggaaac 150  Q
    ||||||||||||||||||| ||||||||  |||||| |||||||||||||| ||||  ||||||   |||||||||||  |||| |||||||||||    
T  776 taagatgttggatacgatgttccaacatcttggcacggttcagtgtgcctg-gttcatgcctacacttacgcgcgccttgtattatttaaggaaac 682  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 38119 - 38074
Alignment:
Q  55 taagatgttggatacgatgctccaacattctggcacagttcagtgt 100  Q
    ||||||||||||||||||| |||||||| ||||||||||| |||||    
T  38119 taagatgttggatacgatgttccaacatcctggcacagttaagtgt 38074  T

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Target: scaffold0034 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 50258 - 50303
Alignment:
Q  58 gatgttggatacgatgctccaacattctggcacagttcagtgtgcc 103  Q
    |||||||||||||||| |||||||| || |||||||||||||||||    
T  50258 gatgttggatacgatgttccaacatcctagcacagttcagtgtgcc 50303  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 26335 - 26251
Alignment:
Q  204 cgtgatgttggaacattaatcgtaacattgcaaacgttaaaacatcatatagaacattt-aaaacaagtgcgctagaatttcaaa 287  Q
    ||||||||||||| | | | || ||||||  ||||||| ||||||| || ||||||||| ||||||| | |||||||||||||||    
T  26335 cgtgatgttggaaaaatgaacggaacattataaacgttgaaacatcttacagaacattttaaaacaattacgctagaatttcaaa 26251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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