View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_low_36 (Length: 347)

Name: NF1484_low_36
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_low_36
NF1484_low_36
[»] chr6 (4 HSPs)
chr6 (18-151)||(12748463-12748594)
chr6 (182-250)||(12748395-12748463)
chr6 (242-334)||(12748120-12748210)
chr6 (177-233)||(17706678-17706734)
[»] chr7 (4 HSPs)
chr7 (152-325)||(28574443-28574615)
chr7 (157-333)||(39023468-39023638)
chr7 (149-335)||(45669876-45670060)
chr7 (198-272)||(46574914-46574988)
[»] chr8 (3 HSPs)
chr8 (150-335)||(16611037-16611216)
chr8 (153-335)||(8164421-8164603)
chr8 (204-300)||(465027-465125)
[»] chr5 (7 HSPs)
chr5 (149-336)||(35106567-35106753)
chr5 (150-335)||(7155108-7155293)
chr5 (150-272)||(4261300-4261420)
chr5 (149-322)||(8787580-8787750)
chr5 (218-335)||(39593162-39593272)
chr5 (149-231)||(26340657-26340739)
chr5 (203-272)||(11695107-11695176)
[»] chr1 (6 HSPs)
chr1 (150-335)||(29827655-29827840)
chr1 (149-283)||(37493170-37493303)
chr1 (150-336)||(25175304-25175485)
chr1 (177-270)||(31017150-31017242)
chr1 (177-272)||(19152545-19152637)
chr1 (194-272)||(43449521-43449598)
[»] chr4 (2 HSPs)
chr4 (150-272)||(43793155-43793277)
chr4 (150-322)||(42507199-42507370)
[»] chr2 (2 HSPs)
chr2 (152-252)||(3272453-3272553)
chr2 (207-251)||(3272534-3272578)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 12748594 - 12748463
Alignment:
Q  18 aaattagtcaaagaataaataaaaggtaatggaagttagcaaacttctttcttaatcgtcttctcttaagggggcagatggtgcttctcttgtgttgatc 117  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12748594 aaattagtcaaagagtaaataagaggtaatggaagttagcaaacttctttcttaatcgtcttctcttaa--gggcagatggtgcttctcttgtgttgatc 12748497  T
Q  118 acttgcatgattagaagatcgaatatggatctga 151  Q
    || |||||||||||||||||||||||||||||||    
T  12748496 acctgcatgattagaagatcgaatatggatctga 12748463  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 12748463 - 12748395
Alignment:
Q  182 aaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatattttttaa 250  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12748463 aaaatcacttaagcacacattcattaaaatatctatcatttaattatttcaaaaagatatattttttaa 12748395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 12748210 - 12748120
Alignment:
Q  242 attttttaattcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttct 334  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||| ||||||||||| |||||||| | |||||||||    
T  12748210 attttttaattcctttctctttcatacttttcccttttatgtgtgtgt--ctaaatgacacatatttatgctagtgaccaaacgcgtgtttct 12748120  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 17706678 - 17706734
Alignment:
Q  177 aaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaa 233  Q
    |||||||||||| |||  |||| ||| ||||||||||| ||| ||||||||||||||    
T  17706678 aaatcaaaatcatttagacacatacttattaaaatatcaatcttttaattatttcaa 17706734  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 152 - 325
Target Start/End: Complemental strand, 28574615 - 28574443
Alignment:
Q  152 gaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatattttttaat 251  Q
    |||||||||||||| | ||||||| |||||||||||  ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||    
T  28574615 gaaatacttatatggacacaacaccaaatcaaaatcttttaggcacacactcattaaaatatctatcatttagttatttcaaaaagatata-ttttaaat 28574517  T
Q  252 tcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagca 325  Q
    || |||||||||||||||||||   ||||||||| || || ||||||||| |||||||||||||| ||||||||    
T  28574516 tcttttctctttcatacttttcttttttatgtgtatgcgcctaaatgacacatatttatgcttgtcaccaagca 28574443  T

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Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 157 - 333
Target Start/End: Original strand, 39023468 - 39023638
Alignment:
Q  157 acttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatattttttaattcctt 256  Q
    ||||||||| | ||||||| |||||||||||||||| | ||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  39023468 acttatatggatacaacaccaaatcaaaatcacttaggtacac--tcattaaaatatttatcatttaattatttcaaaaagatatattttttaattcttt 39023565  T
Q  257 tctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttc 333  Q
    ||||||||||||||||||  ||||||| |||| ||    | | || ||||||||||||| ||||||||| |||||||    
T  39023566 tctctttcatacttttcctttttatgtatgtgcgc----acgccacatatttatgcttgcgaccaagcaagtgtttc 39023638  T

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Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 149 - 335
Target Start/End: Original strand, 45669876 - 45670060
Alignment:
Q  149 tgagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttt 248  Q
    ||||||||||||||||  | ||||||| |||||||||| | ||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||    
T  45669876 tgagaaatacttatatagagacaacaccaaatcaaaattatttaggcacacactcattaaaatatctatcatttaattatttaaaaaaaaaatattattt 45669975  T
Q  249 aattcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttctc 335  Q
    ||||| ||||||||||||| |||| |   ||||||||||||  ||||||||   |  |||||||||||||| ||||| |||||||||    
T  45669976 aattcttttctctttcatattttttctcattatgtgtgtgt--ttaaatgagtcacttttatgcttgtgactaagcaagtgtttctc 45670060  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 46574914 - 46574988
Alignment:
Q  198 acactcattaaaatatctatcatttaattatttcaaaa--agatatattttttaattcctttctctttcatactttt 272  Q
    |||||||||||||||||||||| ||||||| || ||||  | ||||||| |||||||  ||||||||||||| ||||    
T  46574914 acactcattaaaatatctatcaattaattactttaaaaataaatatattatttaatt--tttctctttcatattttt 46574988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 150 - 335
Target Start/End: Complemental strand, 16611216 - 16611037
Alignment:
Q  150 gagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttta 249  Q
    ||||||||||| |||||| |||| || |||| ||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||||||| |||    
T  16611216 gagaaatacttgtatgaacacaaaaccaaattaaaatcatttaggcacatattcattaaaatatctatcatttaattatttcaaaaagatatatttatta 16611117  T
Q  250 attcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttctc 335  Q
    ||| |||||||||||| |||||||||  |||    ||||||| ||||||| | ||||||||||||||||||||||| |||||||||    
T  16611116 atttctttctctttcacacttttccc--tta----tgtgtgcctaaatgatacatatttatgcttgtgaccaagcaagtgtttctc 16611037  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 153 - 335
Target Start/End: Complemental strand, 8164603 - 8164421
Alignment:
Q  153 aaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatattttttaatt 252  Q
    ||||||||||||| | ||||||| ||||||||||   ||| ||||||| | ||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  8164603 aaatacttatatggacacaacaccaaatcaaaattttttaggcacacatttattaaaatatctatcctttaattatttcaaaaaggtatatttttgaatt 8164504  T
Q  253 cctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttctc 335  Q
    ||||||||||||||||||||  | |||||||||| |||  ||||||||| |||||||||| |||||  || || |||||||||    
T  8164503 cctttctctttcatacttttttcttttatgtgtgcgtgtctaaatgacacatatttatgcatgtgattaaacaagtgtttctc 8164421  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 465027 - 465125
Alignment:
Q  204 attaaaatatctatcatttaattatttcaaaaagatatattttttaattcctttctctttcata--cttttcccatttatgtgtgtgtgcttaaatgac 300  Q
    ||||| |||||||| |||||||||||||||||| | ||||  || ||||| ||||||||| |||   |||| | |||||||  ||||||||||||||||    
T  465027 attaacatatctattatttaattatttcaaaaaaaaatatagttcaattcttttctcttttatatggtttttcaatttatgaatgtgtgcttaaatgac 465125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 149 - 336
Target Start/End: Original strand, 35106567 - 35106753
Alignment:
Q  149 tgagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttt 248  Q
    |||||||||||| |||| | ||||||| |||||||| | | ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  35106567 tgagaaatacttgtatggacacaacaccaaatcaaatt-atttagggacacactcattcaaatatctatcatttaattatttcaaaaagatatattattt 35106665  T
Q  249 aattcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttctct 336  Q
    ||||   |||||||||||||||||| | | |||||||  | || |||||||  |||||||||| ||||||||||||| ||||||||||    
T  35106666 aatttacttctctttcatacttttcacttgtatgtgtacgcgcctaaatgagttatatttatgtttgtgaccaagcaagtgtttctct 35106753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 150 - 335
Target Start/End: Complemental strand, 7155293 - 7155108
Alignment:
Q  150 gagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttta 249  Q
    |||||||||||||||  | |||| || |||||||||||| |||   | ||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  7155293 gagaaatacttatatagacacaatactaaatcaaaatcatttagatatacactcattaaaatatctatcatttaattatttcaaaaatatatattattta 7155194  T
Q  250 attcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttctc 335  Q
    |||| ||||||||||||||||||     |||||||||||||  ||||||||   | |||||||||||||||||||| |||| ||||    
T  7155193 attcttttctctttcatactttttatcattatgtgtgtgtgtctaaatgactcgtttttatgcttgtgaccaagcaagtgtatctc 7155108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 4261300 - 4261420
Alignment:
Q  150 gagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttta 249  Q
    |||||||||||||||    ||||||| |||||||||||| |||  |||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||    
T  4261300 gagaaatacttatatagccacaacaccaaatcaaaatcatttagacacacactaattaaaatatctattatttaattatttcaaaaatatatattattta 4261399  T
Q  250 attcctttctctttcatactttt 272  Q
    |||  ||||||||||||||||||    
T  4261400 att--tttctctttcatactttt 4261420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 322
Target Start/End: Complemental strand, 8787750 - 8787580
Alignment:
Q  149 tgagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttt 248  Q
    ||||||||||||||||| || |||||  |||||||||||| |||| |||| ||||||||| ||||||||||||| ||||||| ||||||||||||| |||    
T  8787750 tgagaaatacttatatggaa-caacatcaaatcaaaatcatttaaacacatactcattaatatatctatcattt-attattttaaaaagatatattattt 8787653  T
Q  249 aattcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaa 322  Q
     | || ||||||||||||||||||  | ||||||| | ||||  ||| |||| ||||||||| ||| |||||||    
T  8787652 caatcttttctctttcatactttt-tcttttatgtatatgtgtctaagtgacttatatttatacttctgaccaa 8787580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 218 - 335
Target Start/End: Original strand, 39593162 - 39593272
Alignment:
Q  218 catttaattatttcaaaaagatatattttttaattcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtg 317  Q
    ||||||||||||||||||||||||||     || |||| |||||||||||||||| |||||||||||||||  | ||||||||||||||||||| |||||    
T  39593162 catttaattatttcaaaaagatatat-----aactcctctctctttcatactttttccatttatgtgtgtg--cctaaatgacatatatttatgtttgtg 39593254  T
Q  318 accaagcacgtgtttctc 335  Q
    | ||| || |||||||||    
T  39593255 atcaaacaagtgtttctc 39593272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 26340657 - 26340739
Alignment:
Q  149 tgagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttc 231  Q
    ||||| ||||||||||| | ||||||| ||||||||||| | |||||||||| |||||||||||| ||||||||| |||||||    
T  26340657 tgagagatacttatatggacacaacaccaaatcaaaatctcctaagcacacaatcattaaaatatatatcatttagttatttc 26340739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 11695176 - 11695107
Alignment:
Q  203 cattaaaatatctatcatttaattatttcaaaaagatatattttttaattcctttctctttcatactttt 272  Q
    |||||||||||| |||||||||||| ||  |||| ||||||| |||||||| ||| ||||||||| ||||    
T  11695176 cattaaaatatcgatcatttaattaattttaaaatatatattatttaattcttttatctttcatattttt 11695107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 150 - 335
Target Start/End: Original strand, 29827655 - 29827840
Alignment:
Q  150 gagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttta 249  Q
    |||||||||||||||| | || |||| |||| ||||| | ||  ||||||| |||||||||||||||| ||||||||||||||||| |||||||| || |    
T  29827655 gagaaatacttatatggacacgacaccaaattaaaattattttggcacacattcattaaaatatctataatttaattatttcaaaaggatatattattca 29827754  T
Q  250 attcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttctc 335  Q
    |||| ||||||||||||||||||| | |||||||| |||||  |||||||  |||||||||| ||||||  ||||| |||| ||||    
T  29827755 attcatttctctttcatacttttctcttttatgtgagtgtgtctaaatgatttatatttatggttgtgattaagcaagtgtatctc 29827840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 283
Target Start/End: Original strand, 37493170 - 37493303
Alignment:
Q  149 tgagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttt 248  Q
    ||||||||| |||||||| | |||||| ||||||| |||| ||| ||||||| ||||||||| |||||||||||||| |||||||||||||||||| |||    
T  37493170 tgagaaatatttatatgata-caacaccaaatcaatatcatttaggcacacattcattaaaacatctatcatttaataatttcaaaaagatatattattt 37493268  T
Q  249 aattcctttctctttcatacttttcccatttatgt 283  Q
     ||||||||||||| |||||||||||| |||||||    
T  37493269 cattcctttctcttccatacttttcccttttatgt 37493303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 150 - 336
Target Start/End: Original strand, 25175304 - 25175485
Alignment:
Q  150 gagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttta 249  Q
    |||||||| || |||| | ||||||| |||||||||||| ||| |||||  |||||||||||||||||||||||||||||||||||| |   || | |||    
T  25175304 gagaaatatttgtatggacacaacaccaaatcaaaatcatttaggcacatcctcattaaaatatctatcatttaattatttcaaaaaaa---atatatta 25175400  T
Q  250 attcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaagcacgtgtttctct 336  Q
    | || |||||||||||||||||  || ||||||| |||| |  |||||||| ||||||||||||||||||||| || |||| |||||    
T  25175401 agtcttttctctttcatacttt--ccttttatgtatgtgagtctaaatgacttatatttatgcttgtgaccaatcaagtgtgtctct 25175485  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 270
Target Start/End: Complemental strand, 31017242 - 31017150
Alignment:
Q  177 aaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatattttttaattcctttctctttcatactt 270  Q
    |||||||||| | ||| | |||||||||||||||||||||||||||||||| || ||||| ||||||| |||||||| |||| |||||||||||    
T  31017242 aaatcaaaattatttaggtacacactcattaaaatatctatcatttaattaatt-aaaaatatatattatttaattcttttcactttcatactt 31017150  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 272
Target Start/End: Complemental strand, 19152637 - 19152545
Alignment:
Q  177 aaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatattttttaattcctttctctttcatactttt 272  Q
    |||||||||||| ||| ||| ||||||||||||||||||   |||||||||||| ||||| |||  || |||||||| ||||||||||||| ||||    
T  19152637 aaatcaaaatcatttaggcaaacactcattaaaatatct---atttaattattttaaaaatatacgttatttaattcttttctctttcatattttt 19152545  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 43449598 - 43449521
Alignment:
Q  194 gcacacactcattaaaatatctatcatttaattatttcaaaaagatatattttttaattcctttctctttcatactttt 272  Q
    |||||||||||| ||||||  |||||||||||||||| ||||| | ||||| |||||||  ||||||||||||||||||    
T  43449598 gcacacactcat-aaaatacatatcatttaattattttaaaaatacatattatttaattattttctctttcatactttt 43449521  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 43793155 - 43793277
Alignment:
Q  150 gagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatatttttta 249  Q
    ||||||||||| |||| | ||| ||| |||||||||||| ||| |||| |||||||||| | ||||||||||||||||||||||||||||||| | ||||    
T  43793155 gagaaatacttgtatggatacatcactaaatcaaaatcatttaggcacgcactcattaatacatctatcatttaattatttcaaaaagatataatattta 43793254  T
Q  250 attcctttctctttcatactttt 272  Q
    |||| ||||||||||||||||||    
T  43793255 attcttttctctttcatactttt 43793277  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 322
Target Start/End: Complemental strand, 42507370 - 42507199
Alignment:
Q  150 gagaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagata-tatttttt 248  Q
    ||||||||||||||   | |||| || ||||||||||||  ||| || |||||||||| ||||||||| |||||||||||||||||||||| |||| |||    
T  42507370 gagaaatacttataaagacacaataccaaatcaaaatcatataatcatacactcattataatatctattatttaattatttcaaaaagatattattattt 42507271  T
Q  249 aattcctttctctttcatacttttcccatttatgtgtgtgtgcttaaatgacatatatttatgcttgtgaccaa 322  Q
    ||||| ||||| ||||||||||||  | ||||  | |||| ||||||||||| |||||||||| || |||||||    
T  42507270 aattcttttctttttcatacttttttctttta--tatgtgcgcttaaatgacttatatttatgtttctgaccaa 42507199  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 252
Target Start/End: Original strand, 3272453 - 3272553
Alignment:
Q  152 gaaatacttatatgaaaacaacacgaaatcaaaatcacttaagcacacactcattaaaatatctatcatttaattatttcaaaaagatatattttttaat 251  Q
    |||||| ||||||  | ||||||| |||||||||||| |||  || | |||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  3272453 gaaataattatatagacacaacaccaaatcaaaatcatttagacatatactcattaaaatatctattatttaattatttcaaaaatatatattatttaat 3272552  T
Q  252 t 252  Q
    |    
T  3272553 t 3272553  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 3272534 - 3272578
Alignment:
Q  207 aaaatatctatcatttaattatttcaaaaagatatattttttaat 251  Q
    ||||||| ||| |||||||||||||||||| ||||||| ||||||    
T  3272534 aaaatatatattatttaattatttcaaaaatatatattatttaat 3272578  T

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