View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_38 (Length: 329)
Name: NF1484_low_38
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 10548681 - 10548794
Alignment:
| Q |
199 |
aattgtcgtgagtttactatttacttgaatgtttgacattgctcacaatttcatcctttttatttatagtgatgttaaattttggtttgtttttggcaat |
298 |
Q |
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| T |
10548681 |
aattgtcgtgagtttactatttacttgaatgtttgacattgctcacaatttcatcctttttatttatagtgatgttaaattttggtttgtttttggcaat |
10548780 |
T |
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| Q |
299 |
agacatgtcaaatt |
312 |
Q |
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| T |
10548781 |
agacatgtcaaatt |
10548794 |
T |
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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 10548506 - 10548598
Alignment:
| Q |
24 |
attgttatctactttttatcttcttaacttgatagtgaaatccataaaacaaaacaattttaaattcaaaataatttttgtaagagagatatgc |
117 |
Q |
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| T |
10548506 |
attgttatctactttttatcttcttaacttgttagtgaaatccataaaa-aaaacaattttaaattcaaaataatttttgtaagagagatatgc |
10548598 |
T |
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