View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_39 (Length: 326)
Name: NF1484_low_39
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 31284627 - 31284335
Alignment:
| Q |
18 |
actactaaatcattgatatctaaaaattgaagatatattagggagttgaagattatgaggaggaatttgcattctcttttcagtttctttcaattttatg |
117 |
Q |
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| T |
31284627 |
actactaaatcattgatatctaaaaattgaagatatat-agggagttgaatattatgaggaggaatttgcattctcttttcagtttctttcaattttatg |
31284529 |
T |
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| Q |
118 |
acatttccaagtttcaatacttcacttgcatgggatctaaacagggctatgcaatgcaactccaaagcacagcgcatgtgagactaatccaaaataatca |
217 |
Q |
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| T |
31284528 |
acatttccaagtttcaatacttcacttgcatggaatctaaacagggctatgcaatgcacctccaaagcacagcgcatgtgagactaatccaaaataatca |
31284429 |
T |
|
| Q |
218 |
aatctaaaaaatccaagctacccctgataagcatcattctgctctaagacattgatcccaacaaacatcaccgaacatttcttattgtgtgctc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31284428 |
aatctaaaaaatccaagctacccctgataagcatcattctgctctaagacattgatcccaacaaacatcactgaacatttcttattgtgtgctc |
31284335 |
T |
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