View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_40 (Length: 326)
Name: NF1484_low_40
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 288211 - 288513
Alignment:
| Q |
1 |
tagataattcttctaagttttgacaacactatttcatctaaattaaatgaaaacagacgaaaagatgcaagtacgattcataatatattacataccttgc |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
288211 |
tagatagttcttctaagttttgacaacactatttcatctaaattaaatgaaaacaaacgaaaagatgcgagtacgattcataatatattacatacattgc |
288310 |
T |
|
| Q |
101 |
tcgatccacttaaaatgaaactatgtgttgaaggatgcaagtaacgacaaccacacatatatgacatgattccttcctctaagcgatggcgaatccaacg |
200 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
288311 |
tcgattcacttaaaatgaaactatgtgttgaatgatgcaagtaacgacaaccacacgtatatgtcatgattccttcctctaagctatggcgaatccaacg |
288410 |
T |
|
| Q |
201 |
ttataatcaacaaccagattttggaagaattttccaggagctaagttgtaaatggcttttgttttgagagggaagatattaa-attgtttttgtgtataa |
299 |
Q |
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|||||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
288411 |
ttataatcgacaaccaaatttcggaagaattttcctggagctaagttgtaaatggcttttgttttgagagggaagatattaatattgttttcgtgtataa |
288510 |
T |
|
| Q |
300 |
ttt |
302 |
Q |
| |
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||| |
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| T |
288511 |
ttt |
288513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 284178 - 284223
Alignment:
| Q |
9 |
tcttctaagttttgacaacactatttcatctaaattaaatgaaaac |
54 |
Q |
| |
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| T |
284178 |
tcttctaagttttgacaacattatttcatctaaattaaatgaaaac |
284223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 166
Target Start/End: Complemental strand, 46977585 - 46977498
Alignment:
| Q |
80 |
ataatatattacat-accttgctcgatccacttaaaatgaaactatgtgttgaaggatgcaagtaacgacaaccacacatatatgaca |
166 |
Q |
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|||||||||| ||| ||||||| |||||| | |||||||| ||||||| |||||||| ||||||||||||| |||| |||||||| |
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| T |
46977585 |
ataatatattccattaccttgcctgatccattgaaaatgaatttatgtgtcaaaggatgcgagtaacgacaacctcacagatatgaca |
46977498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 2 - 281
Target Start/End: Original strand, 24527570 - 24527848
Alignment:
| Q |
2 |
agataattcttctaagttttgacaacactatttcatctaaattaaatgaaaacagacgaaaagatgcaagtacgattcataatatattacataccttgct |
101 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| || |
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| T |
24527570 |
agatagttcttcttagttttgacaacactatttcatctaaattaaaggaaaacaaac-aaaagatgcgggtacgattcataatatcttacataccttact |
24527668 |
T |
|
| Q |
102 |
cgatccacttaaaatgaaactatgtgttgaaggatgcaagtaacgacaaccacacatatatgacatgattccttcctctaagcgatggcgaatccaacgt |
201 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| ||| |||||| ||||| || ||||||||||| ||| || ||| || || || ||||||||| | |
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| T |
24527669 |
cgatccacttaaaatgaaactatgtgttaaaggatacaaataacgataaccagacgtatatgacatgtttctatcttctcagtgacggtgaatccaacat |
24527768 |
T |
|
| Q |
202 |
tataatcaacaaccagattttggaagaattttccaggagctaagttgtaaatggcttttgttttgagagggaagatatta |
281 |
Q |
| |
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| ||||||| |||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||||| ||||||| |
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| T |
24527769 |
tctaatcaagaaccagatttcggaagaattttccaggagctaagttgtagacgaattttgttttgagagggatgatatta |
24527848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 24522803 - 24523082
Alignment:
| Q |
1 |
tagataattcttctaagttttgacaacactatttcatctaaattaaatgaaaacagacgaaaagatgcaagtacgattcataatatattacataccttgc |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| || ||||||||| |||||||||| ||||||||| ||||||| | |
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| T |
24522803 |
tagatagttcttctaagttttgacaacactatttcatgtaaattaaaggaaaacaaac-aaaagatgccggtacgattcacaatatattaaataccttac |
24522901 |
T |
|
| Q |
101 |
tcgatccacttaaaatgaaactatgtgttgaaggatgcaagtaacgacaaccacacatatatgacatgattccttcctctaagcgatggcgaatccaacg |
200 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| | | ||| |||||||| |||||||||||||| ||| ||||| | || || ||||||| | | |
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| T |
24522902 |
tcgatccacttaaaatgaaattatgtgttgaaggatacgaataatgacaaccagacatatatgacatgtttctttcctgtcagtgactgcgaatcaagca |
24523001 |
T |
|
| Q |
201 |
ttataatcaacaaccagattttggaagaattttccaggagctaagttgtaaatggcttttgttttgagagggaagatatta |
281 |
Q |
| |
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|| ||||| | |||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||| |||| |
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| T |
24523002 |
ttctaatcgagaaccagatttcggaagaattttcctaaagctaagttgtaaacgaattttgttttgagagggaagacatta |
24523082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 11849507 - 11849443
Alignment:
| Q |
75 |
gattcataatatattacat-accttgctcgatccacttaaaatgaaactatgtgttgaaggatgc |
138 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||| ||||| |||||||| |||||||||||| |
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|
| T |
11849507 |
gattcataatatgttccattaccttgctcgatccactcaaaattaaactatgcgttgaaggatgc |
11849443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 298
Target Start/End: Complemental strand, 11849351 - 11849291
Alignment:
| Q |
236 |
aggagctaagttgtaaatggcttttgttttgagagggaagatattaaattgtttttgtgtata |
298 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||| ||||||| ||||||| |||||| |
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| T |
11849351 |
aggagctaagttgtaaatgatttttgttttgagagggaatatattaa--tgtttttatgtata |
11849291 |
T |
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