View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_42 (Length: 317)
Name: NF1484_low_42
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 53324310 - 53324108
Alignment:
| Q |
1 |
atgattgataaaccatcatgatgaggacatgaatgaaccacttctttgggagatgaaagttgaagatgattgttgcagacttgcggaaactatttacata |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||| | ||||||||||| ||| |
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| T |
53324310 |
atgattgataaaccatcataatgaggacatgaatgaaccacttctttggaagacgagagttgaagatgattgttgcagactttcagaaactatttaaata |
53324211 |
T |
|
| Q |
101 |
tattttgtattaagtgattatgacattggattttacatattaggatggcaattggaatctgcaccttgtactgttattgaatgttgaagcaactatttag |
200 |
Q |
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|||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
53324210 |
tattttgtgttaattgatcatgacgctggattttacatattaggatggcaattggaatctacaccttgtactgttattgaatgttgaagcaactgtttag |
53324111 |
T |
|
| Q |
201 |
ctt |
203 |
Q |
| |
|
||| |
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|
| T |
53324110 |
ctt |
53324108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 53324057 - 53323965
Alignment:
| Q |
202 |
ttggtgttgaaacaatttagcttcagtctcacttttgttctt-gcacattttggaggtttatatttatgtctctttgagtggacatgttgtta |
293 |
Q |
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| T |
53324057 |
ttggtgttgaaacaatttagcttcagtgtcacttttgttctttgcacattttggaggtttatatttatgtctctttcagtggacatgttgtta |
53323965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 35051312 - 35051512
Alignment:
| Q |
1 |
atgattgataaaccatcatgatgaggacatgaatgaaccacttctttgggagatgaaagttgaagatgattgttgcagacttgcggaaactatttacata |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |
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| T |
35051312 |
atgattgataaaccatcagaatgaggacatgaatgaaccacttctttgggagatgagagttgaagatgattgttgcagacttgcagaaactatttaaatt |
35051411 |
T |
|
| Q |
101 |
tattttgtattaagtgattatgacattggattttacatattaggatggcaattggaatctgcaccttgtactgttattgaatgttgaagcaactatttag |
200 |
Q |
| |
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|| | || ||||||||||| || | | ||||||||| ||||||||||||||||||||| || |||||||||||||||||||| | || |||||||||| |
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| T |
35051412 |
ta--tagtgttaagtgattaagaaactacattttacatgttaggatggcaattggaatctacagcttgtactgttattgaatgtagtagaaactatttag |
35051509 |
T |
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| Q |
201 |
ctt |
203 |
Q |
| |
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||| |
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|
| T |
35051510 |
ctt |
35051512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 35051562 - 35051666
Alignment:
| Q |
202 |
ttggtgttgaaacaatttagcttcagtctcacttttgttctt-gcacattttggaggtttatatttatgtctctttgagtggacatg-ttgttattttgt |
299 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
35051562 |
ttggtgttgaaacaatttagcttcagtcccacttttgttctttgcacattttggaggtttatatttatgtctctttgagtggacatgtttgttactttgt |
35051661 |
T |
|
| Q |
300 |
gatga |
304 |
Q |
| |
|
||||| |
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|
| T |
35051662 |
gatga |
35051666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9283732 - 9283646
Alignment:
| Q |
1 |
atgattgataaaccatcatgat--gag-gacatgaatgaaccacttctttgggagatgaaagttgaagatgattgttgcagacttgc |
84 |
Q |
| |
|
|||| |||||||||||||| || ||| ||||||||||||||||| |||||||| |||| ||||||| ||||| ||||||||||||| |
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| T |
9283732 |
atgaatgataaaccatcatcatatgagagacatgaatgaaccactgctttgggatatgagagttgaaaatgatagttgcagacttgc |
9283646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20006094 - 20006058
Alignment:
| Q |
1 |
atgattgataaaccatcatgatgaggacatgaatgaa |
37 |
Q |
| |
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||||||||||||||||||| || |||||||||||||| |
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|
| T |
20006094 |
atgattgataaaccatcataataaggacatgaatgaa |
20006058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14124271 - 14124307
Alignment:
| Q |
1 |
atgattgataaaccatcatgatgaggacatgaatgaa |
37 |
Q |
| |
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||||||||||||||||||| || |||||||||||||| |
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| T |
14124271 |
atgattgataaaccatcataataaggacatgaatgaa |
14124307 |
T |
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