View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_45 (Length: 302)
Name: NF1484_low_45
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 39158218 - 39157939
Alignment:
| Q |
10 |
attatacttttttaaacttgttccttgctccagccttgaccaggatta-------agttatacagatatgtgttattctaaattgcacacagtgatataa |
102 |
Q |
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| T |
39158218 |
attatacttttttaaacttgttccttgctccaaccttgaccaggaatccaggattagttatacagatatgtgttattctaaattgcacacagtgatataa |
39158119 |
T |
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| Q |
103 |
taagtggactcgccccatatactgaaaataatataaccaaaagcaataataatcccagaaactcatatactaactaattgtttacacaacatatcaagtt |
202 |
Q |
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| T |
39158118 |
taagtggactc---ccatatactgaaa-taatataaccaaaagcaataataatcccagaaactcatatactaactaattgtttacacaacatatcaagtt |
39158023 |
T |
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| Q |
203 |
gaatgactttgttgtagcctaattaaagagtaataagtcccatttgatctatcattcagtaactgtgaatgagaaccttgttcc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39158022 |
gaatgactttgttgtagcctaattaaagagtaataagtcccatttgatctatcattcagtaactgtgaatgagaaccttgttcc |
39157939 |
T |
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