View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_low_46 (Length: 299)

Name: NF1484_low_46
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_low_46
NF1484_low_46
[»] chr7 (3 HSPs)
chr7 (13-176)||(23922568-23922731)
chr7 (199-282)||(23923554-23923637)
chr7 (226-279)||(23923468-23923521)
[»] chr8 (6 HSPs)
chr8 (199-282)||(32712743-32712826)
chr8 (199-282)||(10643012-10643095)
chr8 (199-281)||(11682126-11682208)
chr8 (226-279)||(10643128-10643181)
chr8 (226-279)||(32712657-32712710)
chr8 (226-272)||(11682041-11682086)
[»] scaffold0586 (2 HSPs)
scaffold0586 (199-282)||(3586-3669)
scaffold0586 (227-279)||(3702-3754)
[»] chr4 (1 HSPs)
chr4 (11-63)||(17316151-17316203)
[»] chr3 (1 HSPs)
chr3 (87-163)||(15099359-15099435)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 23922568 - 23922731
Alignment:
Q  13 aatatataagtacttatatccacaatcaacaatttaacttcttataaccacccaacaatttaactacttatatatctctaccataataatcatgacgaag 112  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23922568 aatatataagtacttatagccacaatcaacaatttaacttcttataaccacacaacaatttaactacttttatatctctaccataataatcatgacgaag 23922667  T
Q  113 tgaactaacctaattcatgagaggtaaggataatcaatgaatatgctcagtaaataatcagtag 176  Q
    | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  23922668 taaactaacctaattcatgagaggtgaggataatctatgaatatgctcagtaaataatcagtag 23922731  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 23923554 - 23923637
Alignment:
Q  199 accaaaaccatagcagaaaaaccagccgccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataacttcg 282  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23923554 accaaaaccatagcagaaaaaccaaccgtcgaggcacagacaaaccatagcagaaaaaaccaacagtggcctgccataacttcg 23923637  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 23923468 - 23923521
Alignment:
Q  226 gccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataact 279  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  23923468 gccgaggcacagacaaaccatagtagaaaaaaccaacattggcctgccataact 23923521  T

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Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 32712743 - 32712826
Alignment:
Q  199 accaaaaccatagcagaaaaaccagccgccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataacttcg 282  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  32712743 accaaaaccatagcagaaaaaccagccgccgaggcacagacaaaccatagcagaaaaatccaacagtggcctgccataacttcg 32712826  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 10643095 - 10643012
Alignment:
Q  199 accaaaaccatagcagaaaaaccagccgccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataacttcg 282  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  10643095 accaaaaccatagcagaaaaaccagccgtccaggcacagacaaaccatagcagaaaaatccaacagtggcctgccataacttcg 10643012  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 11682126 - 11682208
Alignment:
Q  199 accaaaaccatagcagaaaaa-ccagccgccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataacttc 281  Q
    ||||||||||||||||||||| ||||| ||||||| | |||||||||||||||| ||||| ||| |||||||||||||||||||    
T  11682126 accaaaaccatagcagaaaaaaccagcagccgagggacagacaaaccatagcag-aaaaatcaaaagtggcctgccataacttc 11682208  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 10643181 - 10643128
Alignment:
Q  226 gccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataact 279  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||||||||    
T  10643181 gccgaggcacaaacaaaccatagcagaaaaaaccaacattggcctgccataact 10643128  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 32712657 - 32712710
Alignment:
Q  226 gccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataact 279  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  32712657 gccgaggcacagacaaaccatagcagaaaaaaccaacattggcctgcaataact 32712710  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 11682041 - 11682086
Alignment:
Q  226 gccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgc 272  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||||    
T  11682041 gccgaggcacagacaaaccatagcag-aaaaaccaacattggcctgc 11682086  T

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Target: scaffold0586 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 199 - 282
Target Start/End: Complemental strand, 3669 - 3586
Alignment:
Q  199 accaaaaccatagcagaaaaaccagccgccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataacttcg 282  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  3669 accaaacccatagcagaaaaaccagccgccgaggcacagacaaaccatagcagaaaaatccaacagtggcctgccataacttcg 3586  T

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Target: scaffold0586; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 3754 - 3702
Alignment:
Q  227 ccgaggcatagacaaaccatagcagaaaaaaccaacagtggcctgccataact 279  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  3754 ccgaggcacagacaaaccatagcagaaaaaaccaacattggcctgccataact 3702  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 17316151 - 17316203
Alignment:
Q  11 agaatatataagtacttatatccacaatcaacaatttaacttcttataaccac 63  Q
    ||||||||| |||||||||| |||||||||| ||||||||| |||||||||||    
T  17316151 agaatatattagtacttataaccacaatcaaaaatttaactacttataaccac 17316203  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 15099359 - 15099435
Alignment:
Q  87 tctctaccataataatcatgacgaagtgaactaacctaattcatgagaggtaaggataatcaatgaatatgctcagt 163  Q
    |||||||| ||||||  |||||  ||||||||||||| ||||||||||| | |||||| |||| | | |||||||||    
T  15099359 tctctaccttaataaaaatgacagagtgaactaacctgattcatgagagatgaggatagtcaacgcaaatgctcagt 15099435  T

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