View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_low_48 (Length: 281)

Name: NF1484_low_48
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_low_48
NF1484_low_48
[»] chr1 (7 HSPs)
chr1 (16-270)||(6450160-6450419)
chr1 (145-235)||(16192259-16192348)
chr1 (115-216)||(27900887-27900988)
chr1 (132-213)||(33746355-33746436)
chr1 (83-235)||(6727948-6728100)
chr1 (18-67)||(27900786-27900835)
chr1 (132-216)||(33746821-33746905)
[»] chr4 (1 HSPs)
chr4 (133-216)||(40407640-40407722)
[»] chr5 (1 HSPs)
chr5 (86-144)||(14121990-14122048)
[»] chr2 (3 HSPs)
chr2 (151-236)||(6788507-6788591)
chr2 (114-169)||(1517785-1517841)
chr2 (115-170)||(12676447-12676503)
[»] chr8 (1 HSPs)
chr8 (132-191)||(42844878-42844937)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 6450160 - 6450419
Alignment:
Q  16 atatacttatttactgttatatcaatccacataagtacttatttattgtcataatagtagttcataaaagaaaagagttactttctgcattgaagaacta 115  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  6450160 atatactcatttactgttaaatcaatccacataagtacttatttattgtcataatagtagttcataaaataaaggagttactgtctgcattgaagaacta 6450259  T
Q  116 ttttaacgtcaacaattattttgactaatt-----aatgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggtta 210  Q
    |||||||||||| |||||||| ||||||||     |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||    
T  6450260 ttttaacgtcaaaaattatttcgactaattaacagaatgtataatcaaagactattttaaattttttgatacattgaaggattgttatgactattcgtta 6450359  T
Q  211 cacattgaatgacgaaaatgactatttaacctatttatattaatgtttgatatatagtag 270  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  6450360 cacattgaatgatgaaaatgactatttaacttatttatattaatgtttgatatatagtag 6450419  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 16192259 - 16192348
Alignment:
Q  145 taatgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacacattgaatgacgaaaatgactat 235  Q
    ||||| ||||||| | ||||||||||| |||| |||||||||||||| | ||||| ||||| |||||||||| ||  || |||||||||||    
T  16192259 taatgcacaatcagaaactattttaaaatttt-gatacattgaaggaatattatgactacttgttacacattcaagtactaaaatgactat 16192348  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 27900887 - 27900988
Alignment:
Q  115 attttaacgtcaacaattattttgactaattaat-gtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacac 213  Q
    ||||||||||||   | ||||| |||||| |||| | ||||||| ||||||||||||||||||| ||||||||||||| | || || |||||  ||||||    
T  27900887 attttaacgtcatggactatttcgactaactaattgcacaatcatagactattttaaatttttt-atacattgaaggactattctgactactcattacac 27900985  T
Q  214 att 216  Q
    |||    
T  27900986 att 27900988  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 33746436 - 33746355
Alignment:
Q  132 tattttgactaattaa-tgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacac 213  Q
    |||||||||||||||| ||||||||||| |||||||||| | |||||  ||||||||| |||| || || ||||| |||||||    
T  33746436 tattttgactaattaagtgtacaatcaatgactattttacaattttt-ctacattgaatgattattgtgactactcgttacac 33746355  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 6727948 - 6728100
Alignment:
Q  83 aagaaaagagttactttctgcattgaagaactattttaacgtcaacaattattttgactaa-ttaatgtacaatcaaagactattttaaattttttgata 181  Q
    ||||||||||||| | ||  |||||||| |||||||||| |||||  | ||||||||||||  || || |||||  |||||||||||  |  |||||||     
T  6727948 aagaaaagagttagtgtcaacattgaagcactattttaaagtcaaagactattttgactaacatagtgcacaatggaagactattttgga-attttgatt 6728046  T
Q  182 cattgaaggattgttatggctactggttacacattgaatgacgaaaatgactat 235  Q
    |||||||||| | || || ||| | |||||||||| |  |||||||||||||||    
T  6728047 cattgaaggactattgtgactattcgttacacattcagggacgaaaatgactat 6728100  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 27900835 - 27900786
Alignment:
Q  18 atacttatttactgttatatcaatccacataagtacttatttattgtcat 67  Q
    ||||||||||| ||| ||||||||||  ||||||||||| ||||||||||    
T  27900835 atacttatttattgtcatatcaatccttataagtacttacttattgtcat 27900786  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 33746905 - 33746821
Alignment:
Q  132 tattttgactaattaa-tgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacacatt 216  Q
    |||||||||||||||| ||||||||||| |||||||||| | ||| |  ||||||||| |||| || || ||||| ||||||||||    
T  33746905 tattttgactaattaagtgtacaatcaatgactattttacaatttat-ctacattgaatgattattgtgactactcgttacacatt 33746821  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 40407640 - 40407722
Alignment:
Q  133 attttgactaattaatgtacaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacacatt 216  Q
    ||||||||||   |||| |||||||| |||||||||||| |||| |||||||||||||| | |||||| ||||  |||||||||    
T  40407640 attttgactagcaaatgcacaatcaatgactattttaaaatttt-gatacattgaaggactattatggttactccttacacatt 40407722  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 14121990 - 14122048
Alignment:
Q  86 aaaagagttactttctgcattgaagaactattttaacgtcaacaattattttgactaat 144  Q
    |||||||||| | ||  |||||||||||||||||||||||   ||||||||||||||||    
T  14121990 aaaagagttattatcaacattgaagaactattttaacgtcgtgaattattttgactaat 14122048  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 6788507 - 6788591
Alignment:
Q  151 acaatcaaagactattttaaattttttgatacattgaaggattgttatggctactggttacacattgaatgacgaaaatgactatt 236  Q
    ||||||| | ||||||||||| |||| ||||||||||| || | ||||| ||| | |||||||||| || || |||||||||||||    
T  6788507 acaatcagaaactattttaaaatttt-gatacattgaatgactattatgactatttgttacacatttaaggatgaaaatgactatt 6788591  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 1517785 - 1517841
Alignment:
Q  114 tattttaacgtcaacaattattttgactaattaa-tgtacaatcaaagactatttta 169  Q
    |||||||||||||| || ||| ||||||||| || |||||||||| |||||||||||    
T  1517785 tattttaacgtcaagaactatattgactaatgaagtgtacaatcatagactatttta 1517841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 12676503 - 12676447
Alignment:
Q  115 attttaacgtcaacaattattttgactaattaa-tgtacaatcaaagactattttaa 170  Q
    ||||||||||||  ||||||||||||||| ||| || ||||||| ||||||||||||    
T  12676503 attttaacgtcagaaattattttgactaactaagtgcacaatcatagactattttaa 12676447  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 42844937 - 42844878
Alignment:
Q  132 tattttgactaattaa-tgtacaatcaaagactattttaaattttttgatacattgaagga 191  Q
    |||||||||||||||| ||||||||||||| |||||  ||| |||| ||||||||||||||    
T  42844937 tattttgactaattaagtgtacaatcaaagcctattcgaaaatttt-gatacattgaagga 42844878  T

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