View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_50 (Length: 274)
Name: NF1484_low_50
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 53214513 - 53214770
Alignment:
| Q |
1 |
acagaaaaatcttgtatttgactggttcagattaaataatccaaaatatgacaaaaccctcaatgcagaagtttttgcacattcttgacatgttttagat |
100 |
Q |
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| T |
53214513 |
acagaaaaatcttgtatttgactgattcagattaaataatccaaaatatgacaaaaccctcaatgcagaagtttttgcacattcttgacatgtttcagat |
53214612 |
T |
|
| Q |
101 |
gtaatgatctgaaccactaaaatattgtttatggattatattatttgaaacatcccgagaacatggacaacattattgccaccgaggtttggctgatggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53214613 |
gtaatgatctgaaccactaaaatattgtttatggattatattatttgaaacatcccgagaacatggacaacattattgccaccgaggtttggctgatggg |
53214712 |
T |
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| Q |
201 |
tggcattgtcaacaacctttgactggttagtcccgttttacacatccatattgattgt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53214713 |
tggcattgtcaacaacctttgactggttagtcccgttttacacatccatattgattgt |
53214770 |
T |
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