View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_56 (Length: 250)
Name: NF1484_low_56
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 49163023 - 49162783
Alignment:
| Q |
10 |
gcagagatggtaagaaaggaaatgatggaccaaggggtgaagaaagtgcctggctgtagttggattgagataagaaatgtggtgactgcatttgtatcag |
109 |
Q |
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| T |
49163023 |
gcagagatggtaagaaaggaaatgatggaccaaggggtgaagaaagtgcctggctgtagttggattgagataagaaatgtggtgactgcatttgtatcag |
49162924 |
T |
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| Q |
110 |
gaaataatttatatccttgcatggctgatatatctaagatactatacttccttgaattagaaatgagacacacacgacccattcattttgatattgaatg |
209 |
Q |
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| T |
49162923 |
gaaataatttatatccttgcatggctgatatatctaagatactatacttccttgaattagaaatgagacacacacggcccattaattttgatattgaatg |
49162824 |
T |
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| Q |
210 |
atcttttataaaccagtgatgcatttatgtgaaataatttt |
250 |
Q |
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| T |
49162823 |
atcttttataaaccagagatgcatttatgtgaaataatttt |
49162783 |
T |
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