View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_58 (Length: 250)
Name: NF1484_low_58
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 41080042 - 41080259
Alignment:
| Q |
22 |
catcaagaggtctatatgtttcttttatatgacaagtagtacctgaacctgaaattaaactaactatataaaacagttggaacataaatgcaacaaatat |
121 |
Q |
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| T |
41080042 |
catcaagaggtctatatgtttcttttatatgacaagtagtacctgaacctgaaattaaactaactatataaaacagttagaacataaatgcaacaaatat |
41080141 |
T |
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| Q |
122 |
gttatattaaatatcccctcttaagttggaagatatatgttcaatatccccaactaggaaatgagatgctgaaaagggattttaggtagtgcttttgtca |
221 |
Q |
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| T |
41080142 |
gttatattaaatatcccctcttaagttggaagatatatgttcaatatccccaactaggaaatgagatgctgaaaagggattttaggtagtgcttttgtca |
41080241 |
T |
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| Q |
222 |
atgggtcagctagttcat |
239 |
Q |
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| T |
41080242 |
atgggtcagctagttcat |
41080259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 74 - 236
Target Start/End: Original strand, 41091445 - 41091606
Alignment:
| Q |
74 |
aattaaactaactatataaaacagttggaacataaatgcaacaaatatgttatattaaatatcccc-tcttaagttggaagatatatgttcaatatcccc |
172 |
Q |
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| T |
41091445 |
aattaaactaactata--aaacagtgataacataaatgcaacaaatttgttatattcaatatccccctctcaagttggaagatatatgtttgaaatcccc |
41091542 |
T |
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| Q |
173 |
aactaggaaatgagatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagtt |
236 |
Q |
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| T |
41091543 |
aacttggaaatgagatgcagaatagggattttaggtagtgcttttttcaatgggtcagctagtt |
41091606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 41101559 - 41101708
Alignment:
| Q |
88 |
tataaaacagttggaacataaatgcaacaaatatgttatattaaatatcc-cctcttaagttggaagatata-tgttcaatatccccaactaggaaatga |
185 |
Q |
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||||||||||| ||||||||||||| |||| ||||||||| ||||||| ||||| |||||||||| |||| ||||||||||| |||||| |||||||| |
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| T |
41101559 |
tataaaacagtaataacataaatgcaagaaatttgttatattcaatatcctcctctcaagttggaaggtataatgttcaatatctccaacttggaaatga |
41101658 |
T |
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| Q |
186 |
gatgctgaaaagggattttaggtagtgcttttgtcaatgggtcagctagtt |
236 |
Q |
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| T |
41101659 |
gatgctgaaaagggatttt-ggtagtgcttttttcaatgggtaagctagtt |
41101708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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