View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_59 (Length: 250)
Name: NF1484_low_59
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 9451435 - 9451677
Alignment:
| Q |
6 |
gtcgaagaatatctcgtcaacttc---cctgcattaagattagggaaaagagagattaatgtgaaataatataacataaatatcaataacagagttcgat |
102 |
Q |
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| T |
9451435 |
gtcgaataatatctcgtcaacttcttccctgcattaagattagggaaaagagagattaatatgaaataatataacataaatatcaataacagagttcgat |
9451534 |
T |
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| Q |
103 |
taattttggctacatcttaggactgtttgcatacttttcaatt-aaaagaaaaatgtatataaagtatttacaatcactcacaaaagagcatttaagcct |
201 |
Q |
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| T |
9451535 |
taaatttggctacatcttaggactg-ttgcagacttttcaattgaaaagaaaaatatatataaagtatttacaatcattcacaaaagagcatttaagcct |
9451633 |
T |
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| Q |
202 |
aaaaataattatcttgttggctaattgatagggaagcgtatagt |
245 |
Q |
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| T |
9451634 |
aaaaataattatcatgttggctaattgatagggaagcgtatagt |
9451677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 9428562 - 9428726
Alignment:
| Q |
6 |
gtcgaagaatatctcgtcaacttccctgcattaagattagggaaaagagagattaatgtgaaataatataacataaatatcaataa-cagagttcgatta |
104 |
Q |
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|||||| ||||| || ||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
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| T |
9428562 |
gtcgaataatatttcatcaacttccctgcattaagataagg-aagagagagattaatgtgaaataatataacatagatatcgataatcagagttcgatta |
9428660 |
T |
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| Q |
105 |
attttggctacatcttaggactgtttgcatacttttcaatt-aaaagaaaaatgtatataaagtatt |
170 |
Q |
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| T |
9428661 |
aaattagctacatcttaggactg-ttgcagacttttctattgcaaagaaaaatatatattaagtatt |
9428726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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