View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_60 (Length: 250)
Name: NF1484_low_60
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_60 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 219
Target Start/End: Complemental strand, 4988333 - 4988127
Alignment:
| Q |
10 |
ataatactataaaatcagttatgaaactaaatatctaagttagtctcaattaattaatcgaatcatgcatatgattcataaataatgataaaatatgtgt |
109 |
Q |
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| T |
4988333 |
ataaaactataaaatcaattatgaaactaaatatctaatttagtctcaattaattaatcgaatcatgcatatgattcataaataatgataaaatatgtgt |
4988234 |
T |
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| Q |
110 |
ttaatcattcttgatgaactgaactggtacactttaaatatgttggatacagtacaccaccattcttggttaaattaaagaatatactccctccgttcta |
209 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||| || |
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| T |
4988233 |
ttaatcattcttgatgaactgaactgatacactttaaatatgttgggtacagtac---accattcttggttaaattaatgaatatactccctccgtttta |
4988137 |
T |
|
| Q |
210 |
tattataagc |
219 |
Q |
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|||||||||| |
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| T |
4988136 |
tattataagc |
4988127 |
T |
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