View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_low_66 (Length: 242)

Name: NF1484_low_66
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_low_66
NF1484_low_66
[»] chr4 (4 HSPs)
chr4 (1-211)||(50781472-50781682)
chr4 (123-158)||(56084229-56084264)
chr4 (99-156)||(27060046-27060103)
chr4 (121-158)||(34953548-34953585)
[»] chr1 (6 HSPs)
chr1 (118-159)||(28639931-28639972)
chr1 (122-159)||(35990014-35990051)
chr1 (9-69)||(32055998-32056058)
chr1 (119-159)||(41932532-41932572)
chr1 (119-159)||(41933454-41933494)
chr1 (119-157)||(34549972-34550010)
[»] chr7 (2 HSPs)
chr7 (119-159)||(18500446-18500486)
chr7 (119-158)||(3600952-3600991)
[»] chr2 (3 HSPs)
chr2 (119-159)||(815696-815736)
chr2 (123-158)||(21649666-21649701)
chr2 (119-157)||(25631339-25631377)
[»] chr3 (3 HSPs)
chr3 (122-156)||(36337629-36337663)
chr3 (119-156)||(25214536-25214573)
chr3 (119-155)||(29582354-29582390)
[»] chr8 (2 HSPs)
chr8 (99-148)||(12732959-12733008)
chr8 (119-159)||(17865051-17865091)
[»] chr6 (2 HSPs)
chr6 (119-159)||(33555127-33555167)
chr6 (119-159)||(17519969-17520009)
[»] chr5 (8 HSPs)
chr5 (119-159)||(8840547-8840587)
chr5 (119-159)||(16490115-16490155)
chr5 (119-159)||(27690415-27690455)
chr5 (122-158)||(28443220-28443256)
chr5 (122-158)||(32695146-32695182)
chr5 (119-156)||(23344766-23344803)
chr5 (99-155)||(1431187-1431243)
chr5 (123-155)||(32285616-32285648)
[»] scaffold0072 (1 HSPs)
scaffold0072 (99-144)||(13601-13646)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 50781472 - 50781682
Alignment:
Q  1 tgccaaaccccccaaatcacaatttttaacataatatatgcacatttcaggttatataatccgaaccaacattggacatgtgctcatattgtatgatctg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  50781472 tgccaaaccccccaaatcacaatttttaacataatatatgcacatttcaggttatataatccgaaccaacattggacatgtgctcagattgtatgatttg 50781571  T
Q  101 gattgtggcgatacaattaaggtttggacggtttgtggtgtgtttaatgcatttttggtatgcttggttcactttacatgtttcctttgaatttagttac 200  Q
    |||||| ||| ||||| |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  50781572 gattgttgcgttacaagtaaggtttggacggtttgtgatgtgtttaatgcatttttgacatgcttggttcactttacatgtttcctttgaatttagttac 50781671  T
Q  201 ggtctaagttg 211  Q
     | ||||||||    
T  50781672 aggctaagttg 50781682  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 56084264 - 56084229
Alignment:
Q  123 tttggacggtttgtggtgtgtttaatgcatttttgg 158  Q
    |||| |||||||||||||||||||||||||||||||    
T  56084264 tttgaacggtttgtggtgtgtttaatgcatttttgg 56084229  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 27060046 - 27060103
Alignment:
Q  99 tggattgtggcgatacaattaaggtttggacggtttgtggtgtgtttaatgcattttt 156  Q
    |||||||||||  |||||  || || |||||||| |||||||||||||||||||||||    
T  27060046 tggattgtggcattacaagcaatgtgtggacggtctgtggtgtgtttaatgcattttt 27060103  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 34953548 - 34953585
Alignment:
Q  121 ggtttggacggtttgtggtgtgtttaatgcatttttgg 158  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  34953548 ggtttggacggttagtggagtgtttaatgcatttttgg 34953585  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 28639931 - 28639972
Alignment:
Q  118 taaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  28639931 taaggtttggatggtttgtggtgtgtttaatgcatttttggt 28639972  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 35990014 - 35990051
Alignment:
Q  122 gtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35990014 gtttggacggtttgtggtgtgtttaatgcatttttggt 35990051  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 32056058 - 32055998
Alignment:
Q  9 cccccaaatcacaatttttaacataatatatgcacatttcaggttatataatccgaaccaa 69  Q
    ||||||||||||||||||||||| ||| ||||||| |||||| ||||||| || |||||||    
T  32056058 cccccaaatcacaatttttaacacaatttatgcacgtttcagattatatattctgaaccaa 32055998  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 41932532 - 41932572
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  41932532 aaggttgggacggtttgtggtgtgtttaatgcatttttggt 41932572  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 41933454 - 41933494
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  41933454 aaggtttggacggtttgtggtgtgtttaatccatttttggt 41933494  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 34550010 - 34549972
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttg 157  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  34550010 aaggtttggacggttagtggtgtgtttaatgaatttttg 34549972  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 18500486 - 18500446
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  18500486 aaggtttggacgatttgtggtgtgtttaatgcatttttggt 18500446  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 3600952 - 3600991
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttgg 158  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  3600952 aaggtttggacggttagtggtgtgtttaatgaatttttgg 3600991  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 815736 - 815696
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  815736 aaggtttagacggtttgtggtgtgtttaatgcatttttggt 815696  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Original strand, 21649666 - 21649701
Alignment:
Q  123 tttggacggtttgtggtgtgtttaatgcatttttgg 158  Q
    ||||||||||||||||||||||||||| ||||||||    
T  21649666 tttggacggtttgtggtgtgtttaatgaatttttgg 21649701  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Original strand, 25631339 - 25631377
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttg 157  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  25631339 aaggtttggacagttagtggtgtgtttaatgcatttttg 25631377  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 36337663 - 36337629
Alignment:
Q  122 gtttggacggtttgtggtgtgtttaatgcattttt 156  Q
    |||||||||||||||||||||||||||||||||||    
T  36337663 gtttggacggtttgtggtgtgtttaatgcattttt 36337629  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 25214536 - 25214573
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcattttt 156  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  25214536 aaggtttggacggtttgtggtatgtttaatgcattttt 25214573  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 29582390 - 29582354
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttt 155  Q
    |||||||||| | ||||||||||||||||||||||||    
T  29582390 aaggtttggatgatttgtggtgtgtttaatgcatttt 29582354  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 12733008 - 12732959
Alignment:
Q  99 tggattgtggcgatacaattaaggtttggacggtttgtggtgtgtttaat 148  Q
    ||||||| |||| |||||| |||||||||||||||||||||| |||||||    
T  12733008 tggattgcggcgttacaatcaaggtttggacggtttgtggtgcgtttaat 12732959  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 17865051 - 17865091
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    |||||||| ||||||||||| ||||||||| ||||||||||    
T  17865051 aaggtttgaacggtttgtggcgtgtttaattcatttttggt 17865091  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 33555127 - 33555167
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  33555127 aaggtttgaacggtttgtggtgtatttaatgcatttttggt 33555167  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 17520009 - 17519969
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    |||||||||| |||| ||||||||||||||| |||||||||    
T  17520009 aaggtttggatggttagtggtgtgtttaatgaatttttggt 17519969  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 8840587 - 8840547
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  8840587 aaggtttggatggtttgtggtgtgtttaatgtatttttggt 8840547  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 16490115 - 16490155
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  16490115 aaggttttgacggtttgtggtgtgtttaatgtatttttggt 16490155  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 27690415 - 27690455
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcatttttggt 159  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  27690415 aaggtttggacggtttgtgaagtgtttaatgcatttttggt 27690455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 28443256 - 28443220
Alignment:
Q  122 gtttggacggtttgtggtgtgtttaatgcatttttgg 158  Q
    ||||||||| |||||||||||||||||||||||||||    
T  28443256 gtttggacgatttgtggtgtgtttaatgcatttttgg 28443220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 32695182 - 32695146
Alignment:
Q  122 gtttggacggtttgtggtgtgtttaatgcatttttgg 158  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32695182 gtttggacggtttgtggtgtatttaatgcatttttgg 32695146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Original strand, 23344766 - 23344803
Alignment:
Q  119 aaggtttggacggtttgtggtgtgtttaatgcattttt 156  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  23344766 aaggtttggacggttagtggagtgtttaatgcattttt 23344803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 1431243 - 1431187
Alignment:
Q  99 tggattgtggcgatacaattaaggtttggacggtttgtggtgtgtttaatgcatttt 155  Q
    |||||||||||| || ||  || | ||||||||||||| ||||||||||||||||||    
T  1431243 tggattgtggcgttataaggaatggttggacggtttgtagtgtgtttaatgcatttt 1431187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 32285648 - 32285616
Alignment:
Q  123 tttggacggtttgtggtgtgtttaatgcatttt 155  Q
    ||||||||||||||||||||||||||| |||||    
T  32285648 tttggacggtttgtggtgtgtttaatgtatttt 32285616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 13601 - 13646
Alignment:
Q  99 tggattgtggcgatacaattaaggtttggacggtttgtggtgtgtt 144  Q
    |||||||||||| ||||| ||||||||  |||||||||||||||||    
T  13601 tggattgtggcgttacaagtaaggttttaacggtttgtggtgtgtt 13646  T

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