View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_low_70 (Length: 238)

Name: NF1484_low_70
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_low_70
NF1484_low_70
[»] chr3 (14 HSPs)
chr3 (18-235)||(23701127-23701344)
chr3 (18-235)||(23719582-23719799)
chr3 (18-235)||(23738038-23738255)
chr3 (18-143)||(23769491-23769617)
chr3 (143-238)||(23769662-23769757)
chr3 (146-238)||(23698533-23698625)
chr3 (146-238)||(23716988-23717080)
chr3 (146-238)||(23735444-23735536)
chr3 (18-83)||(23698319-23698385)
chr3 (78-136)||(23698422-23698480)
chr3 (18-83)||(23716774-23716840)
chr3 (78-136)||(23716877-23716935)
chr3 (18-83)||(23735230-23735296)
chr3 (78-136)||(23735333-23735391)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 23701127 - 23701344
Alignment:
Q  18 aaacatatgtggcgagaatccaagattgaagagaaaataaacaagaaactcaataacttgacgacataggagaaacgataaaactgagagaaagtatcaa 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23701127 aaacatatgtggcgagaatccaagattgaacagaaaataaacaagaaactcaataacttgacgacataggagaaacgataaaactgagagaaagtatcaa 23701226  T
Q  118 ctgacagaatttaccataaacgtacacagtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaacgttctagttgtga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23701227 ctgacagaatttaccataaacgtacacagtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaatgttctagttgtga 23701326  T
Q  218 caacaaatatttgaagat 235  Q
    ||||||||||||||||||    
T  23701327 caacaaatatttgaagat 23701344  T

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Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 23719582 - 23719799
Alignment:
Q  18 aaacatatgtggcgagaatccaagattgaagagaaaataaacaagaaactcaataacttgacgacataggagaaacgataaaactgagagaaagtatcaa 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23719582 aaacatatgtggcgagaatccaagattgaacagaaaataaacaagaaactcaataacttgacgacataggagaaacgataaaactgagagaaagtatcaa 23719681  T
Q  118 ctgacagaatttaccataaacgtacacagtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaacgttctagttgtga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23719682 ctgacagaatttaccataaacgtacacagtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaatgttctagttgtga 23719781  T
Q  218 caacaaatatttgaagat 235  Q
    ||||||||||||||||||    
T  23719782 caacaaatatttgaagat 23719799  T

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Target: chr3; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 23738038 - 23738255
Alignment:
Q  18 aaacatatgtggcgagaatccaagattgaagagaaaataaacaagaaactcaataacttgacgacataggagaaacgataaaactgagagaaagtatcaa 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23738038 aaacatatgtggcgagaatccaagattgaacagaaaataaacaagaaactcaataacttgacgacataggagaaacgataaaactgagagaaagtatcaa 23738137  T
Q  118 ctgacagaatttaccataaacgtacacagtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaacgttctagttgtga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23738138 ctgacagaatttaccataaacgtacacagtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaatgttctagttgtga 23738237  T
Q  218 caacaaatatttgaagat 235  Q
    ||||||||||||||||||    
T  23738238 caacaaatatttgaagat 23738255  T

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Target: chr3; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 23769491 - 23769617
Alignment:
Q  18 aaacatatgtggc-gagaatccaagattgaagagaaaataaacaagaaactcaataacttgacgacataggagaaacgataaaactgagagaaagtatca 116  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23769491 aaacatatgtggctgagaatccaagattgaacagaaaataaacaagaaactcaataacttgacgacataggagaaacgataaaactgagagaaaatatca 23769590  T
Q  117 actgacagaatttaccataaacgtaca 143  Q
    || ||||||||||||||||||||||||    
T  23769591 accgacagaatttaccataaacgtaca 23769617  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 23769662 - 23769757
Alignment:
Q  143 acagtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaacgttctagttgtgacaacaaatatttgaagatcca 238  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23769662 acagtcaaatctacaaaaattacgatgaaaaaggacaccaccaaattaaaattcggaagaacgtactagttgtgacaacaaatatttgaagatcca 23769757  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 23698533 - 23698625
Alignment:
Q  146 gtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaacgttctagttgtgacaacaaatatttgaagatcca 238  Q
    |||||||||||||||||||||| ||||||| |  |||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||    
T  23698533 gtcaaatctacaaaaattacgacgaaaaaacatgccaccaaattaaaattcgaaagaacatactagttgtgacaacaaatattttatgatcca 23698625  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 23716988 - 23717080
Alignment:
Q  146 gtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaacgttctagttgtgacaacaaatatttgaagatcca 238  Q
    |||||||| ||||||||||||| ||||||| |  |||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||    
T  23716988 gtcaaatcaacaaaaattacgacgaaaaaacatgccaccaaattaaaattcgaaagaacatactagttgtgacaacaaatattttatgatcca 23717080  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 23735444 - 23735536
Alignment:
Q  146 gtcaaatctacaaaaattacgaagaaaaaagacaccaccaaattaaaattcggaagaacgttctagttgtgacaacaaatatttgaagatcca 238  Q
    |||||||| ||||||||||||| ||||||| |  |||||||||||||||||| |||||| | |||||||||||||||||||||| | ||||||    
T  23735444 gtcaaatcaacaaaaattacgacgaaaaaacatgccaccaaattaaaattcgaaagaacatactagttgtgacaacaaatattttatgatcca 23735536  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 23698319 - 23698385
Alignment:
Q  18 aaacatatgtggc-gagaatccaagattgaagagaaaataaacaagaaactcaataacttgacgaca 83  Q
    |||||||||| || ||||||||||||||||| |  ||||||||||||||||||| | ||||| ||||    
T  23698319 aaacatatgtagctgagaatccaagattgaacaagaaataaacaagaaactcaacagcttgaagaca 23698385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 23698422 - 23698480
Alignment:
Q  78 acgacataggagaaacgataaaactgagagaaagtatcaactgacagaatttaccataa 136  Q
    |||||||||| |||| |||||| | | ||||||||||||||||| ||||||| ||||||    
T  23698422 acgacataggggaaaagataaaccagtgagaaagtatcaactgaaagaatttgccataa 23698480  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 23716774 - 23716840
Alignment:
Q  18 aaacatatgtggc-gagaatccaagattgaagagaaaataaacaagaaactcaataacttgacgaca 83  Q
    |||||||||| || ||||||||||||||||| |  ||||||||||||||||||| | ||||| ||||    
T  23716774 aaacatatgtagctgagaatccaagattgaacaagaaataaacaagaaactcaacagcttgaagaca 23716840  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 23716877 - 23716935
Alignment:
Q  78 acgacataggagaaacgataaaactgagagaaagtatcaactgacagaatttaccataa 136  Q
    |||||||||| |||| |||||| | | ||||||||||||||||| ||||||| ||||||    
T  23716877 acgacataggggaaaagataaaccagtgagaaagtatcaactgaaagaatttgccataa 23716935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 23735230 - 23735296
Alignment:
Q  18 aaacatatgtggc-gagaatccaagattgaagagaaaataaacaagaaactcaataacttgacgaca 83  Q
    |||||||||| || ||||||||||||||||| |  ||||||||||||||||||| | ||||| ||||    
T  23735230 aaacatatgtagctgagaatccaagattgaacaagaaataaacaagaaactcaacagcttgaagaca 23735296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 23735333 - 23735391
Alignment:
Q  78 acgacataggagaaacgataaaactgagagaaagtatcaactgacagaatttaccataa 136  Q
    |||||||||| |||| |||||| | | ||||||||||||||||| ||||||| ||||||    
T  23735333 acgacataggggaaaagataaaccagtgagaaagtatcaactgaaagaatttgccataa 23735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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