View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_73 (Length: 237)
Name: NF1484_low_73
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34438025 - 34438245
Alignment:
| Q |
1 |
ccatagttcaacaagattagctaagaatctataacatccacacaatgaagattattttactgccacatggcaatcacttattgcatgaatggcattggtc |
100 |
Q |
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| T |
34438025 |
ccatagttcaacaagattagctaagaatctataacatccacacaatgaagattattttactgccacatggcaatcacttattgcatgaatggcattggtc |
34438124 |
T |
|
| Q |
101 |
tctgacacctagagacaaaggtctagatcctgctagaattacatccctttccaattctaatgagtaattgttgttactaccacataaagcttgtatagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34438125 |
tctgacacctagagacaaaggtctagatcctgctagaattacatccctttccaattctaatgagtaattgttgttactaccacataaagcttgtatagtc |
34438224 |
T |
|
| Q |
201 |
ctcatctcattaggttcatgc |
221 |
Q |
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||||||||||||| ||||||| |
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| T |
34438225 |
ctcatctcattagtttcatgc |
34438245 |
T |
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