View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_77 (Length: 236)
Name: NF1484_low_77
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 6705635 - 6705416
Alignment:
| Q |
1 |
catgcatcaccctttcactttccttcatcttcttcatcttctggatttgatcaatttgatgtggccggtcctagctcatcatctaacgtcgcttttcgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6705635 |
catgcatcaccctttcactttccttcatcttcttcatcttctggatttgatcaatttgatgtggccggtcctagctcatcatctaacgtcgcttttcgag |
6705536 |
T |
|
| Q |
101 |
ttgtcgatcctcctcgtagacctcattctggaatttggtttatgctacaagcctcacaaaatcagtaagctaacattaannnnnnnacacttatatataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
6705535 |
ttgtcgatcctcctcgtagacctcattctggaatttggtttatgctacaagcctcacaaaatcagtaagctaacattaatttttttacccttatatataa |
6705436 |
T |
|
| Q |
201 |
catttatttatatatgattc |
220 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
6705435 |
catatatttatatatgattc |
6705416 |
T |
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