View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1484_low_78 (Length: 235)
Name: NF1484_low_78
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_78 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7938614 - 7938395
Alignment:
| Q |
1 |
ttcactctaagatagatcctcagtgataagaggcctagtactaacacttcacatttctacttccatccatctttctttttctgttaattagctgtatata |
100 |
Q |
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| T |
7938614 |
ttcactctaagatacatcctcagtgataagaggcctattactaacacttcacatttctacttacatccatctttctttttctgttaattagctgtatata |
7938515 |
T |
|
| Q |
101 |
aattttgagttctccatgaaacttatcctacaatatgtttcattcccagtttagtgaaaaaggtagatacaacaaaatattcaacaaagttttgaagaaa |
200 |
Q |
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| T |
7938514 |
aattttgagttctccatgaaacttatcctacaatatgtttcattcccagtttagtgaaaaaggtagatacaacaaaatattctacaaagttttgaagaaa |
7938415 |
T |
|
| Q |
201 |
ataggcagtaatgaactaga |
220 |
Q |
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|||||||||||||||||||| |
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| T |
7938414 |
ataggcagtaatgaactaga |
7938395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 7925328 - 7925294
Alignment:
| Q |
179 |
attcaacaaagttttgaagaaaataggcagtaatg |
213 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
7925328 |
attcaacaaagtttcgaagaaaataggcagtaatg |
7925294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 13622325 - 13622249
Alignment:
| Q |
6 |
tctaagatagatcctcagtgataagaggcctagtactaacacttcacatttctacttccatccatctttctttttct |
82 |
Q |
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| T |
13622325 |
tctaacatagatcatcaacgataagaggcctattactaaaattttgcatttctactcccatccatctttttttttct |
13622249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 5330254 - 5330209
Alignment:
| Q |
1 |
ttcactctaagatagatcctcagtgataagaggcctagtactaaca |
46 |
Q |
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|||| ||||| ||||||||| |||||||||||||||| |||||||| |
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| T |
5330254 |
ttcagtctaacatagatcctaagtgataagaggcctattactaaca |
5330209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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