View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1484_low_81 (Length: 226)

Name: NF1484_low_81
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1484_low_81
NF1484_low_81
[»] chr7 (19 HSPs)
chr7 (23-212)||(19141892-19142078)
chr7 (23-212)||(20741291-20741477)
chr7 (23-187)||(1782667-1782826)
chr7 (37-210)||(10647070-10647237)
chr7 (118-187)||(2658002-2658071)
chr7 (23-88)||(32957352-32957417)
chr7 (17-81)||(27707589-27707653)
chr7 (175-212)||(3779277-3779314)
chr7 (17-86)||(17891631-17891700)
chr7 (176-206)||(4447055-4447085)
chr7 (17-88)||(9063694-9063767)
chr7 (178-212)||(9802693-9802727)
chr7 (114-152)||(12733375-12733413)
chr7 (116-206)||(32957236-32957329)
chr7 (175-212)||(24882946-24882983)
chr7 (178-206)||(11572834-11572862)
chr7 (176-212)||(13263326-13263362)
chr7 (178-206)||(23125437-23125465)
chr7 (178-206)||(25806883-25806911)
[»] chr2 (10 HSPs)
chr2 (114-212)||(35666432-35666530)
chr2 (116-212)||(16587449-16587547)
chr2 (54-211)||(27765916-27766069)
chr2 (114-205)||(23959068-23959158)
chr2 (119-194)||(21748888-21748964)
chr2 (37-96)||(16587374-16587435)
chr2 (175-212)||(19356047-19356084)
chr2 (130-167)||(19878441-19878478)
chr2 (175-212)||(22383024-22383061)
chr2 (174-210)||(19320917-19320953)
[»] chr3 (24 HSPs)
chr3 (13-212)||(12755860-12756055)
chr3 (17-96)||(19307210-19307289)
chr3 (113-212)||(7160494-7160593)
chr3 (23-88)||(10928710-10928775)
chr3 (114-193)||(19905401-19905479)
chr3 (113-187)||(4514348-4514423)
chr3 (41-88)||(4768015-4768062)
chr3 (175-212)||(14427554-14427591)
chr3 (130-187)||(17034833-17034889)
chr3 (176-212)||(10928588-10928624)
chr3 (174-206)||(12410367-12410399)
chr3 (41-84)||(12759170-12759213)
chr3 (114-156)||(4244114-4244156)
chr3 (175-205)||(4252357-4252387)
chr3 (37-184)||(13291986-13292130)
chr3 (154-187)||(14280529-14280562)
chr3 (116-157)||(19307307-19307348)
chr3 (175-212)||(22770434-22770471)
chr3 (178-206)||(7921307-7921335)
chr3 (175-211)||(8784997-8785033)
chr3 (178-206)||(13931454-13931482)
chr3 (178-206)||(14280479-14280507)
chr3 (176-212)||(14580893-14580929)
chr3 (176-212)||(20724636-20724672)
[»] chr1 (13 HSPs)
chr1 (17-187)||(30806109-30806274)
chr1 (41-88)||(26897813-26897860)
chr1 (176-212)||(35895709-35895745)
chr1 (174-210)||(2819802-2819838)
chr1 (176-212)||(17025459-17025495)
chr1 (128-187)||(19003473-19003533)
chr1 (17-88)||(12397570-12397641)
chr1 (114-149)||(31587292-31587327)
chr1 (19-96)||(17316661-17316738)
chr1 (179-212)||(20758445-20758478)
chr1 (175-212)||(20867342-20867379)
chr1 (175-212)||(23926613-23926650)
chr1 (175-212)||(46181368-46181405)
[»] chr5 (7 HSPs)
chr5 (39-212)||(26013356-26013527)
chr5 (116-204)||(22820922-22821012)
chr5 (175-206)||(20689715-20689746)
chr5 (175-206)||(22820860-22820891)
chr5 (178-212)||(12078379-12078413)
chr5 (175-212)||(13522741-13522778)
chr5 (116-157)||(24838735-24838776)
[»] chr8 (12 HSPs)
chr8 (41-212)||(28888838-28889006)
chr8 (129-202)||(23586570-23586645)
chr8 (17-85)||(24277462-24277530)
chr8 (178-212)||(23173390-23173424)
chr8 (175-212)||(22136367-22136404)
chr8 (175-212)||(22167532-22167569)
chr8 (175-212)||(22211870-22211907)
chr8 (37-86)||(23585210-23585259)
chr8 (114-187)||(26576340-26576413)
chr8 (178-206)||(1210379-1210407)
chr8 (176-212)||(19956911-19956947)
chr8 (44-88)||(24309043-24309087)
[»] chr6 (18 HSPs)
chr6 (128-212)||(22563111-22563197)
chr6 (17-99)||(4098036-4098118)
chr6 (137-212)||(4312148-4312225)
chr6 (114-187)||(29031657-29031729)
chr6 (39-90)||(10815085-10815136)
chr6 (17-88)||(11704245-11704316)
chr6 (177-212)||(14070666-14070701)
chr6 (173-211)||(24719299-24719337)
chr6 (175-212)||(7751690-7751727)
chr6 (175-212)||(15586189-15586226)
chr6 (175-212)||(18554972-18555009)
chr6 (175-212)||(31931125-31931162)
chr6 (175-211)||(3661059-3661094)
chr6 (175-211)||(3671723-3671758)
chr6 (177-205)||(14051985-14052013)
chr6 (174-210)||(15478343-15478379)
chr6 (176-212)||(17047261-17047297)
chr6 (174-210)||(25595728-25595764)
[»] chr4 (16 HSPs)
chr4 (23-88)||(14475056-14475121)
chr4 (47-213)||(21810280-21810443)
chr4 (39-88)||(21822158-21822207)
chr4 (37-88)||(19052970-19053021)
chr4 (174-206)||(2651302-2651334)
chr4 (42-157)||(26621116-26621226)
chr4 (17-76)||(47575465-47575524)
chr4 (175-212)||(4948110-4948147)
chr4 (114-187)||(15366112-15366184)
chr4 (175-212)||(16819826-16819863)
chr4 (39-88)||(17474401-17474450)
chr4 (179-212)||(17474479-17474512)
chr4 (175-212)||(23508888-23508925)
chr4 (178-206)||(13977894-13977922)
chr4 (175-211)||(19889515-19889551)
chr4 (178-206)||(32491418-32491446)
[»] scaffold0220 (1 HSPs)
scaffold0220 (176-212)||(2338-2374)
[»] scaffold0311 (1 HSPs)
scaffold0311 (174-212)||(19624-19662)
[»] scaffold0040 (2 HSPs)
scaffold0040 (178-212)||(8292-8326)
scaffold0040 (178-206)||(4599-4627)
[»] scaffold2071 (1 HSPs)
scaffold2071 (175-212)||(956-993)
[»] scaffold1747 (1 HSPs)
scaffold1747 (176-205)||(875-904)
[»] scaffold1745 (1 HSPs)
scaffold1745 (176-205)||(507-536)
[»] scaffold1551 (1 HSPs)
scaffold1551 (114-187)||(884-956)
[»] scaffold0544 (1 HSPs)
scaffold0544 (175-212)||(10276-10313)
[»] scaffold0073 (1 HSPs)
scaffold0073 (175-212)||(58069-58106)
[»] scaffold0001 (1 HSPs)
scaffold0001 (175-212)||(29283-29320)
[»] scaffold0771 (1 HSPs)
scaffold0771 (176-204)||(5901-5929)
[»] scaffold0758 (1 HSPs)
scaffold0758 (174-210)||(3824-3860)
[»] scaffold0622 (1 HSPs)
scaffold0622 (178-206)||(3985-4013)
[»] scaffold0273 (1 HSPs)
scaffold0273 (176-212)||(22562-22598)
[»] scaffold0022 (1 HSPs)
scaffold0022 (176-212)||(158659-158695)
[»] scaffold0004 (1 HSPs)
scaffold0004 (176-212)||(244806-244842)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 19142078 - 19141892
Alignment:
Q  23 aaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgttt 122  Q
    |||||||||| || || |||||||||||||||||||  |||||||||||||||||||||||||||| |     ||| || || | |  | |  |||||||    
T  19142078 aaatcaaaaagtgcatcgaacacttaagagtttcttttcaaagtttgtatcttagaaattctaagtct-----tatagtttgttctacattgtattgttt 19141984  T
Q  123 actcatctgattgtatatcaagtgtaagaacaaatat--tttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    || | ||||||||||||||||||||||||| |||| |  |||||||| |||| | ||||||||| |||||||||||||||||||||||||||    
T  19141983 acacctctgattgtatatcaagtgtaagaaaaaatctgatttatttgtaatcatctagaagtcttttgcttgtgtgcttgagcattggaagt 19141892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 20741477 - 20741291
Alignment:
Q  23 aaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgttt 122  Q
    |||||||||| || || |||||||||||||||||||  |||||||||||||||||||||||||||| |     ||| || || | |  | |  |||||||    
T  20741477 aaatcaaaaagtgcatcgaacacttaagagtttcttttcaaagtttgtatcttagaaattctaagtct-----tatagtttgttctacattgtattgttt 20741383  T
Q  123 actcatctgattgtatatcaagtgtaagaacaaatat--tttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    || | ||||||||||||||||||||||||| |||| |  |||||||| |||| | ||||||||| |||||||||||||||||||||||||||    
T  20741382 acacctctgattgtatatcaagtgtaagaaaaaatctgatttatttgtaatcatctagaagtcttttgcttgtgtgcttgagcattggaagt 20741291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 1782826 - 1782667
Alignment:
Q  23 aaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgttt 122  Q
    |||||||||| |  ||||||||||||  | ||||||| ||| ||||||||||||||||||||||||||||||||  | ||||     ||| |||||||||    
T  1782826 aaatcaaaaagtccatagaacacttactaatttcttatcaatgtttgtatcttagaaattctaagtttaagagtcagttatg-----tacctaattgttt 1782732  T
Q  123 actcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctctt 187  Q
    || | ||| ||||||||| |||| |||||||||||| || ||||  |||||||||||||| ||||    
T  1782731 acacctctaattgtatattaagtctaagaacaaatacttcatttttaatcttttagaagtttctt 1782667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 210
Target Start/End: Original strand, 10647070 - 10647237
Alignment:
Q  37 atagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgtttactcatctgattgt 136  Q
    ||||||||||||||| ||||||| | |||||  ||||||||||||||||| || |    ||| ||||| ||| ||||||| ||||||| | |||||||||    
T  10647070 atagaacacttaagaatttctta-ctaagttcatatcttagaaattctaatttca----tatagtatgttatgtacttaaatgtttacacctctgattgt 10647164  T
Q  137 atatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaa 210  Q
    |||||||||||||||||| || ||||| ||| || |  ||  ||||||||||||||||||||||| ||||||||    
T  10647165 atatcaagtgtaagaacatatgtttta-ttgtaaacacttttaagtctcttgcttgtgtgcttgaacattggaa 10647237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 2658002 - 2658071
Alignment:
Q  118 tgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctctt 187  Q
    ||||||| | ||| |||||||||||| ||||||||||| ||||||||||  ||||||||| |||||||||    
T  2658002 tgtttacacttcttattgtatatcaaatgtaagaacaagtattttatttataatcttttaaaagtctctt 2658071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 32957417 - 32957352
Alignment:
Q  23 aaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||||||||  | ||| ||||||||||| ||||| |||||||||||||| |||||||||||||||    
T  32957417 aaatcaaaaagcgcatataacacttaagaatttctcaacaaagtttgtattttagaaattctaagt 32957352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 27707589 - 27707653
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaat 81  Q
    ||||| ||||||||||  | ||||||||||||||| ||||||| |||| ||||||||||||||||    
T  27707589 tctgtcaaatcaaaaaacgcatagaacacttaagaatttcttatcaaattttgtatcttagaaat 27707653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 3779277 - 3779314
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  3779277 ttagaagtctcttgcttgtgtgcttgagcataggaagt 3779314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 17891631 - 17891700
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaa 86  Q
    ||||| ||||||||||  | ||| ||||||||||| |||||||  ||||||||||||||| |||||||||    
T  17891631 tctgtcaaatcaaaaagcgcatataacacttaagaatttcttattaaagtttgtatcttataaattctaa 17891700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 4447085 - 4447055
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||||    
T  4447085 tagaagtctcttgcttgtgtgcttgagcatt 4447055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 9063767 - 9063694
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttg--tatcttagaaattctaagt 88  Q
    ||||| ||||||||||  | ||| ||||||||||| ||||||| |||||||||  |||||||||||| ||||||    
T  9063767 tctgtcaaatcaaaaagcgcataaaacacttaagattttcttatcaaagtttgtatatcttagaaatgctaagt 9063694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 9802727 - 9802693
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||||||||||||| ||||||    
T  9802727 gaagtctcttgcttgtgtgcttgagcataggaagt 9802693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 12733413 - 12733375
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaa 152  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  12733413 taattgtttacacatctgattgtatatcaaatgtaagaa 12733375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 32957329 - 32957236
Alignment:
Q  116 attgtttactcatctgattgtatatcaagtgtaagaacaaatat--tttatttgcaatct-tttagaagtctcttgcttgtgtgcttgagcatt 206  Q
    ||||||||| | ||||||| |||||||| ||||||||||||| |  |||||||| || ||  |||||||||| |||||| ||||||| ||||||    
T  32957329 attgtttacacctctgattatatatcaaatgtaagaacaaatcttgtttatttgtaaactcattagaagtcttttgcttttgtgcttaagcatt 32957236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 24882946 - 24882983
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  24882946 ttagaagtctcttgctttagtgcttgagcattggaagt 24882983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 11572834 - 11572862
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  11572834 gaagtctcttgcttgtgtgcttgagcatt 11572862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 13263362 - 13263326
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  13263362 tagaagtctcttgcttttgtgcttgagcataggaagt 13263326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 23125465 - 23125437
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  23125465 gaagtctcttgcttgtgtgcttgagcatt 23125437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 25806911 - 25806883
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  25806911 gaagtctcttgcttgtgtgcttgagcatt 25806883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 35666432 - 35666530
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||| | ||| ||||| |||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||||    
T  35666432 taattgtttacacctctaattgtttatcaagtgtaagaacaaatattttatttgtaaactcttagaagtctcttgcttctgtgcttgagcattggaagt 35666530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 212
Target Start/End: Original strand, 16587449 - 16587547
Alignment:
Q  116 attgtttactcatctgattgtatatcaagtgtaagaacaaatatt--ttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||| | |||||||||||||||||| ||||||||||| ||  ||||||| || | |||||||||||||||| || |||||||||||||||||||    
T  16587449 attgtttacacctctgattgtatatcaagtctaagaacaaatcttgtttatttgaaaacctttagaagtctcttgcatgcgtgcttgagcattggaagt 16587547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 211
Target Start/End: Original strand, 27765916 - 27766069
Alignment:
Q  54 ttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgtttactcatctgattgtatatcaagtgtaagaac 153  Q
    |||||| |||||||||||||||||||||||||||| |     ||| ||||| | | || |  ||| ||||| | ||||||||||||||||||||||||||    
T  27765916 ttcttatcaaagtttgtatcttagaaattctaagtat-----tatagtatgttctatattgtattatttacacctctgattgtatatcaagtgtaagaac 27766010  T
Q  154 aaatatt-ttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaag 211  Q
    |||| || || |||| || | |||||| ||||||| ||| ||| |||||||||||||||    
T  27766011 aaatcttattttttgtaaacctttagaggtctctttcttatgtccttgagcattggaag 27766069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 205
Target Start/End: Complemental strand, 23959158 - 23959068
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcat 205  Q
    |||||| |||| | ||| ||| |||||||||||||| ||||||||||||||||| || |||||||||||||||| | | |||| ||||||||    
T  23959158 taattgcttacacctcttattttatatcaagtgtaa-aacaaatattttatttgtaaacttttagaagtctctttcatttgtgattgagcat 23959068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 21748888 - 21748964
Alignment:
Q  119 gtttactcatctgattgtatatcaagtgtaagaacaaatat-tttatttgcaatcttttagaagtctcttgcttgtg 194  Q
    |||||| | |||||||||||||||||||||||||||||| | |||| ||| || |   |||||||||||||||||||    
T  21748888 gtttacacctctgattgtatatcaagtgtaagaacaaatttgtttacttgtaaacaagtagaagtctcttgcttgtg 21748964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 16587374 - 16587435
Alignment:
Q  37 atagaacacttaagagtttcttaacaaagttt-gtatcttagaaattctaagt-ttaagagt 96  Q
    |||||| |||||||| ||||||| |||||||| ||||||||||||| |||||| ||||||||    
T  16587374 atagaatacttaagaatttcttatcaaagttttgtatcttagaaatgctaagtcttaagagt 16587435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 19356084 - 19356047
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  19356084 ttagaagtctcttgctttagtgcttgagcattggaagt 19356047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 19878441 - 19878478
Alignment:
Q  130 tgattgtatatcaagtgtaagaacaaatattttatttg 167  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19878441 tgattgtatatcaagtgtaacaacaaatactttatttg 19878478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 22383061 - 22383024
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  22383061 ttagaagtctcttgcttttgtgcttgagcataggaagt 22383024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 19320917 - 19320953
Alignment:
Q  174 tttagaagtctcttgcttgtgtgcttgagcattggaa 210  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  19320917 tttagaagtctcttgcttttgtgcttgagcataggaa 19320953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 12755860 - 12756055
Alignment:
Q  13 ttattctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctac 112  Q
    ||||||| | ||||||||||  | ||||||||||||||| ||||||| |||||||| ||||||||||||||||||| | ||||| || | ||   |||      
T  12755860 ttattctatcaaatcaaaaagcgcatagaacacttaagaatttcttatcaaagtttatatcttagaaattctaagtcttagagtctgttctgcattct-- 12755957  T
Q  113 ttaattgtttactcatctgattgtatatcaagtgtaagaacaaatat--tttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaa 210  Q
       ||||||||| | ||  ||||||||||||||||||||| |||| |  |||||||| || | |||||||||||||||||||||||||| ||||||||||    
T  12755958 ---attgtttacacttcatattgtatatcaagtgtaagaaaaaatcttatttatttgtaagc-tttagaagtctcttgcttgtgtgcttaagcattggaa 12756053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 19307210 - 19307289
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagt 96  Q
    ||||| ||||||||||  | |||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  19307210 tctgtcaaatcaaaaagcgcatagaacagttaagaatttcttataaaagtttgtatcttagaaattctaagtttaagagt 19307289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 7160494 - 7160593
Alignment:
Q  113 ttaattgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||| || | ||| || ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |   |||  |||||||||||||||    
T  7160494 ttaattgttaacacctctaatcgtatatcgagtgtaagaacaaatatcttatttgtaatcttttagaagtctctttcagttgttattgagcattggaagt 7160593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 10928775 - 10928710
Alignment:
Q  23 aaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    |||||||||| |||||||||||||||| | ||||||| |||||||||||||||| ||| |||||||    
T  10928775 aaatcaaaaagtgaatagaacacttaataatttcttatcaaagtttgtatcttataaactctaagt 10928710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 19905479 - 19905401
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctcttgcttgt 193  Q
    |||||| |||||||||| |||||||||||| ||||| || |||||||||||||  || || |||||||||||||||||||    
T  19905479 taattgcttactcatctaattgtatatcaaatgtaa-aataaatattttatttataaactcttagaagtctcttgcttgt 19905401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 4514423 - 4514348
Alignment:
Q  113 ttaattgtttactcatctgattgtatatcaagtgtaagaacaaatat-tttatttgcaatcttttagaagtctctt 187  Q
    |||||||||||| | |||||||||||||||||||| ||||||| | | |||||||| || || |||||||||||||    
T  4514423 ttaattgtttacacctctgattgtatatcaagtgtgagaacaactttgtttatttgtaaactcttagaagtctctt 4514348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 4768015 - 4768062
Alignment:
Q  41 aacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  4768015 aacacttaagaatttcttatcaaagttagtatcttagaaattctaagt 4768062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 14427554 - 14427591
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  14427554 ttagaagtctcttgcttgtgtgcttgagcattgcaagt 14427591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 17034833 - 17034889
Alignment:
Q  130 tgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctctt 187  Q
    |||||||||||||||| ||| ||||||||||||||||| || || |||||||||||||    
T  17034833 tgattgtatatcaagtataa-aacaaatattttatttgtaaactcttagaagtctctt 17034889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 10928624 - 10928588
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||| |||||||||||||||||||||||||||||    
T  10928624 tagaagtttcttgcttgtgtgcttgagcattggaagt 10928588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 12410367 - 12410399
Alignment:
Q  174 tttagaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||||||    
T  12410367 tttagaagtctcttgcttgtgtgcttgagcatt 12410399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 12759213 - 12759170
Alignment:
Q  41 aacacttaagagtttcttaacaaagtttgtatcttagaaattct 84  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||    
T  12759213 aacacttaagaatttcttatcaaagtttgtatcttataaattct 12759170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 4244156 - 4244114
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaacaaa 156  Q
    ||||||||||| | |||||||||||||||||||||| ||||||    
T  4244156 taattgtttacacctctgattgtatatcaagtgtaaaaacaaa 4244114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 4252387 - 4252357
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcat 205  Q
    |||||||||||||||||||||||||||||||    
T  4252387 ttagaagtctcttgcttgtgtgcttgagcat 4252357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 13291986 - 13292130
Alignment:
Q  37 atagaacacttaagagtttcttaa-caaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgtttactcatctgattg 135  Q
    ||||||||||||||| ||| || | | |||||||||||||||||||||||||| | ||||| || | || | | |     |||||||||   ||||||||    
T  13291986 atagaacacttaagaatttttttatcgaagtttgtatcttagaaattctaagtattagagtttgttctgttttgt-----attgtttacatctctgattg 13292080  T
Q  136 tatatcaagtgtaagaacaaatat-tttatttgcaatcttttagaagtct 184  Q
    |||||||| |||||||| |||| | |||||||| || || ||||||||||    
T  13292081 tatatcaaatgtaagaataaatctgtttatttgtaaactcttagaagtct 13292130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 14280562 - 14280529
Alignment:
Q  154 aaatattttatttgcaatcttttagaagtctctt 187  Q
    |||||||||||||| |||||||||||||||||||    
T  14280562 aaatattttatttgtaatcttttagaagtctctt 14280529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 19307307 - 19307348
Alignment:
Q  116 attgtttactcatctgattgtatatcaagtgtaagaacaaat 157  Q
    ||||||||| | |||||||||||||||||||||| |||||||    
T  19307307 attgtttacacctctgattgtatatcaagtgtaataacaaat 19307348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 22770434 - 22770471
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  22770434 ttagaagtctcttgcttttgtgcttgagcataggaagt 22770471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 7921307 - 7921335
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  7921307 gaagtctcttgcttgtgtgcttgagcatt 7921335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 8785033 - 8784997
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaag 211  Q
    ||||||||||||||| || ||||||||||||||||||    
T  8785033 ttagaagtctcttgcctgcgtgcttgagcattggaag 8784997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 13931482 - 13931454
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  13931482 gaagtctcttgcttgtgtgcttgagcatt 13931454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 14280507 - 14280479
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  14280507 gaagtctcttgcttgtgtgcttgagcatt 14280479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 14580929 - 14580893
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||  |||||||||||||||||||    
T  14580929 tagaagtctcttgctttagtgcttgagcattggaagt 14580893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 20724672 - 20724636
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  20724672 tagaagtatcttgcttgtgtgcttgagcataggaagt 20724636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 30806109 - 30806274
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaa 116  Q
    ||||| ||||||||||  | |||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||||     || || |   || || |    
T  30806109 tctgtcaaatcaaaaagcgcatagaacatttaagaatttcttatcaaagtttgtatcttagaaattcttagtttaaga-----gtttgttcaatatttta 30806203  T
Q  117 ttgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctctt 187  Q
    |||||||| | | ||||| |||||||||||||||||| |||| || ||||| || | ||||||||||||||    
T  30806204 ttgtttacacctttgattttatatcaagtgtaagaaccaatacttcatttgtaaacctttagaagtctctt 30806274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 26897860 - 26897813
Alignment:
Q  41 aacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  26897860 aacacttaagaatttcttatcaaagtttgtatcttagaaattctaagt 26897813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 35895745 - 35895709
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||||||||||||||||||||||    
T  35895745 tagaagtctcttgcttgtgtgcttgagcattggaagt 35895709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 2819802 - 2819838
Alignment:
Q  174 tttagaagtctcttgcttgtgtgcttgagcattggaa 210  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2819802 tttagaagtctcttgcttttgtgcttgagcattggaa 2819838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 17025459 - 17025495
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||||||||||||||| ||||||    
T  17025459 tagaagtctcttgcttgtgtgcttgagcataggaagt 17025495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 19003473 - 19003533
Alignment:
Q  128 tctgattgtatatcaagtgtaagaacaaatat-tttatttgcaatcttttagaagtctctt 187  Q
    ||||||||||||||||||||||| |||||| | |||||||| || || |||||||||||||    
T  19003473 tctgattgtatatcaagtgtaaggacaaatttgtttatttgtaaactcttagaagtctctt 19003533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 12397641 - 12397570
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||| |||||||||| ||  |||||| || || | ||||||| |||||||||||| |||||||||||||||    
T  12397641 tctgtaaaatcaaaaagtgggtagaacgctgaaaaatttcttatcaaagtttgtattttagaaattctaagt 12397570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 149
Target Start/End: Original strand, 31587292 - 31587327
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaa 149  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31587292 taattgtttacacatctgattgtatatcaagtgtaa 31587327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 17316661 - 17316738
Alignment:
Q  19 tgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagt 96  Q
    ||||||||||||||    ||| ||||||||||| ||||||| ||||||||  ||||| |||||| ||||||| |||||    
T  17316661 tgttaaatcaaaaagcccatacaacacttaagaatttcttatcaaagttttaatctttgaaattttaagttttagagt 17316738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 20758478 - 20758445
Alignment:
Q  179 aagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||||||||| ||||||||||    
T  20758478 aagtctcttgcttgtgtgcttgaacattggaagt 20758445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 20867342 - 20867379
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  20867342 ttagaagtctcttgctttagtgcttgagcattggaagt 20867379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 23926650 - 23926613
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  23926650 ttagaagtctcttgctttagtgcttgagcattggaagt 23926613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 46181368 - 46181405
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  46181368 ttagaagtctcttgctttagtgcttgagcattggaagt 46181405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 26013527 - 26013356
Alignment:
Q  39 agaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt-ttaagagtatggtatggtatctacttaattgtttactcatctgattgta 137  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||| ||||| |||||||| || ||||   | ||     |||||||| | ||||||||||    
T  26013527 agaacacttaagaatttcttatcaaagtttgtatcatagaaattttaagtcttaagagtttgttatgtgttgta-----ttgtttacacctctgattgta 26013433  T
Q  138 tatcaagtgtaagaacaaatat--tttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    | ||||||||||||||| || |  |||||||  || | ||||||||| |||||||||  ||||| ||||||||||||    
T  26013432 tgtcaagtgtaagaacacatttcgtttatttataaacatttagaagtgtcttgcttgcatgcttaagcattggaagt 26013356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 22821012 - 22820922
Alignment:
Q  116 attgtttactcatctgattgtatatcaagtgtaagaacaaatat--tttatttgcaatcttttagaagtctcttgcttgtgtgcttgagca 204  Q
    ||||||||| | ||||||||||||||||||||||||| |||| |  |||||||| || | ||||||||||| || | ||||||||||||||    
T  22821012 attgtttacacctctgattgtatatcaagtgtaagaagaaatcttgtttatttgtaaccctttagaagtctttttcctgtgtgcttgagca 22820922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 20689746 - 20689715
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcatt 206  Q
    ||||||||||||||||||||||||||||||||    
T  20689746 ttagaagtctcttgcttgtgtgcttgagcatt 20689715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 22820891 - 22820860
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcatt 206  Q
    ||||||||||||||||||||||||||||||||    
T  22820891 ttagaagtctcttgcttgtgtgcttgagcatt 22820860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 12078413 - 12078379
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||||||||||||| ||||||    
T  12078413 gaagtctcttgcttgtgtgcttgagcataggaagt 12078379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 13522778 - 13522741
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  13522778 ttagaagtctcttgctttagtgcttgagcattggaagt 13522741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 24838735 - 24838776
Alignment:
Q  116 attgtttactcatctgattgtatatcaagtgtaagaacaaat 157  Q
    ||||||||| | |||||||||||||||| |||||||||||||    
T  24838735 attgtttacacctctgattgtatatcaaatgtaagaacaaat 24838776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 212
Target Start/End: Complemental strand, 28889006 - 28888838
Alignment:
Q  41 aacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgtttactcatctgattgtatat 140  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||| | ||||| |  ||||   | ||     | |||||| | | | |||||||||    
T  28889006 aacacttaataatttcttaccaaagtttgtatcttagaaattctaagtcttagagtctattatgcattgta-----tggtttacaccttttattgtatat 28888912  T
Q  141 caagtgtaagaacaaatat--tttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||| |  |||||||| || | | ||||||| |||||||||||||||||| | ||||||||    
T  28888911 caagtgtaagaacaaatcttatttatttgtaaacatctagaagtatcttgcttgtgtgcttgatcgttggaagt 28888838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 23586570 - 23586645
Alignment:
Q  129 ctgattgtatatcaagtgtaagaacaaatatt--ttatttgcaatcttttagaagtctcttgcttgtgtgcttgag 202  Q
    ||||||||||||||||  ||||||||||| ||  ||||||| ||   ||||||||||||||| |||||||||||||    
T  23586570 ctgattgtatatcaagcttaagaacaaatcttatttatttgtaaatctttagaagtctcttgtttgtgtgcttgag 23586645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 24277462 - 24277530
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattcta 85  Q
    ||||| |||| ||||| || |||||||| ||||||  ||||||  ||||||||||||||||||||||||    
T  24277462 tctgtcaaattaaaaagtgcatagaacaattaagaacttcttataaaagtttgtatcttagaaattcta 24277530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 23173424 - 23173390
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||| |||||||||||||||||||||||||||||    
T  23173424 gaagtttcttgcttgtgtgcttgagcattggaagt 23173390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 22136367 - 22136404
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  22136367 ttagaagtctcttgctttagtgcttgagcattggaagt 22136404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 22167532 - 22167569
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  22167532 ttagaagtctcttgctttagtgcttgagcattggaagt 22167569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 22211870 - 22211907
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  22211870 ttagaagtctcttgctttagtgcttgagcattggaagt 22211907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 23585210 - 23585259
Alignment:
Q  37 atagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaa 86  Q
    ||||||||||||||| ||||||| |||||| ||||| ||| |||||||||    
T  23585210 atagaacacttaagaatttcttatcaaagtctgtatattaaaaattctaa 23585259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 26576413 - 26576340
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctctt 187  Q
    ||||||||||| | |||||||||||||||| |||||||| || | | ||||||| || || | |||||||||||    
T  26576413 taattgtttacacctctgattgtatatcaaatgtaagaaaaactctattatttgtaaactctaagaagtctctt 26576340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 1210379 - 1210407
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  1210379 gaagtctcttgcttgtgtgcttgagcatt 1210407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 19956911 - 19956947
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  19956911 tagaagtctcttgcttgcgtgcttgagcataggaagt 19956947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 24309043 - 24309087
Alignment:
Q  44 acttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||||||  |||||| |||||||||||||||| |||||||||||    
T  24309043 acttaagaacttcttatcaaagtttgtatcttataaattctaagt 24309087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 22563111 - 22563197
Alignment:
Q  128 tctgattgtatatcaagtgtaagaacaaatatt--ttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||| ||||||||||| ||||||||||||| ||  ||||||| || | ||||||| |||||||| || |||||||||||||||||||    
T  22563111 tctggttgtatatcaaatgtaagaacaaatcttgtttatttgtaaacatttagaattctcttgcatgcgtgcttgagcattggaagt 22563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 4098036 - 4098118
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatg 99  Q
    ||||| ||||||||||  | ||||||| |||| || |||||||  ||| ||||||||||||||| ||||||||||||||||||    
T  4098036 tctgtcaaatcaaaaagcgcatagaacgcttaggaatttcttataaaactttgtatcttagaaagtctaagtttaagagtatg 4098118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 4312225 - 4312148
Alignment:
Q  137 atatcaagtgtaagaacaaatatt--ttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||| |||||||||||| ||| ||  ||||||| || | |||||||||||||||| ||||||||||||||| ||||||    
T  4312225 atattaagtgtaagaacgaatcttgtttatttgtaaacctttagaagtctcttgcatgtgtgcttgagcataggaagt 4312148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 29031729 - 29031657
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctctt 187  Q
    ||||||||||| | ||||||||||||||||||||||||| || | ||||||||| || ||  ||||||||||||    
T  29031729 taattgtttacacctctgattgtatatcaagtgtaagaa-aactcttttatttgtaaactcctagaagtctctt 29031657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 10815085 - 10815136
Alignment:
Q  39 agaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagttt 90  Q
    ||||||||||||| | ||||| |||| ||||||||||||||||| |||||||    
T  10815085 agaacacttaagaatctcttatcaaaatttgtatcttagaaattttaagttt 10815136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 11704245 - 11704316
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||| ||||||||||  |||||||||| |||||  ||||| | |||| ||||||||||| |||||||||||    
T  11704245 tctgtcaaatcaaaaagcgaatagaacatttaaggatttctcatcaaaatttgtatcttaaaaattctaagt 11704316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Original strand, 14070666 - 14070701
Alignment:
Q  177 agaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||||||||||||||| ||||||    
T  14070666 agaagtctcttgcttgtgtgcttgagcataggaagt 14070701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 24719299 - 24719337
Alignment:
Q  173 ttttagaagtctcttgcttgtgtgcttgagcattggaag 211  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  24719299 ttttagaagtctcttgcttttgtgcttgagcataggaag 24719337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 7751690 - 7751727
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  7751690 ttagaagtctcttgcttttgtgcttgagcattagaagt 7751727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 15586226 - 15586189
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  15586226 ttagaagtctcttgcttgtgtgctttagcattgtaagt 15586189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 18555009 - 18554972
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  18555009 ttagaagtctcttgctttagtgcttgagcattggaagt 18554972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 31931162 - 31931125
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  31931162 ttagaagtctcttgctttagtgcttgagcattggaagt 31931125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 3661094 - 3661059
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaag 211  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3661094 ttagaagtctcttgctt-tgtgcttgagcattggaag 3661059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 3671758 - 3671723
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaag 211  Q
    ||||||||||||||||| |||||||||||||||||||    
T  3671758 ttagaagtctcttgctt-tgtgcttgagcattggaag 3671723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 14051985 - 14052013
Alignment:
Q  177 agaagtctcttgcttgtgtgcttgagcat 205  Q
    |||||||||||||||||||||||||||||    
T  14051985 agaagtctcttgcttgtgtgcttgagcat 14052013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 15478343 - 15478379
Alignment:
Q  174 tttagaagtctcttgcttgtgtgcttgagcattggaa 210  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  15478343 tttagaagtctcttgcttttgtgcttgagcataggaa 15478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 17047297 - 17047261
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||  |||||||||||||||||||    
T  17047297 tagaagtctcttgctttagtgcttgagcattggaagt 17047261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 25595764 - 25595728
Alignment:
Q  174 tttagaagtctcttgcttgtgtgcttgagcattggaa 210  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  25595764 tttagaagtctcttgcttttgtgcttgagcataggaa 25595728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 14475121 - 14475056
Alignment:
Q  23 aaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||||||||  | ||||||||||||  | ||||||| ||||||||||||||||||||||||||||    
T  14475121 aaatcaaaaagggcatagaacacttacaaatttcttatcaaagtttgtatcttagaaattctaagt 14475056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 21810280 - 21810443
Alignment:
Q  47 taagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgtttactcatctgattgtatatcaagtg 146  Q
    ||||| ||||||| ||||||||||||||| |||||||||||| | ||||| || | ||   | ||     |||||||| | |||||| | || | |||||    
T  21810280 taagaatttcttatcaaagtttgtatctttgaaattctaagtcttagagtttgttttgaattgta-----ttgtttacacctctgatagcatttgaagtg 21810374  T
Q  147 taagaacaaatatt--ttatttgcaatcttttagaagtctcttgcttgtgtgcttgagcattggaagtg 213  Q
    ||||||||||| ||  ||||||  || | ||||||||||||||||||||||||||||||| | ||||||    
T  21810375 taagaacaaatcttatttatttctaaacatttagaagtctcttgcttgtgtgcttgagcactagaagtg 21810443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 21822158 - 21822207
Alignment:
Q  39 agaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||||||||||| ||||||| |||||||||||||||||||||| |||||    
T  21822158 agaacacttaagaatttcttatcaaagtttgtatcttagaaattataagt 21822207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 19053021 - 19052970
Alignment:
Q  37 atagaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||||||||||| | ||| ||| ||||||||||||||||||||||||||||    
T  19053021 atagaacacttaaaacttttttatcaaagtttgtatcttagaaattctaagt 19052970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 2651334 - 2651302
Alignment:
Q  174 tttagaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||||||    
T  2651334 tttagaagtctcttgcttgtgtgcttgagcatt 2651302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 157
Target Start/End: Original strand, 26621116 - 26621226
Alignment:
Q  42 acacttaagagtttcttaacaaagtttgtatcttagaaattctaagtttaagagtatggtatggtatctacttaattgtttactcatctgattgtatatc 141  Q
    |||||||||| ||| ||| |||| ||||||||||||||||||||||| | ||||  || | || | | |     ||| ||||| | ||||||||||||||    
T  26621116 acacttaagaattttttatcaaaatttgtatcttagaaattctaagtattagagcctgttctgttttgt-----attatttacacctctgattgtatatc 26621210  T
Q  142 aagtgtaagaacaaat 157  Q
    ||||||||||||||||    
T  26621211 aagtgtaagaacaaat 26621226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 47575524 - 47575465
Alignment:
Q  17 tctgttaaatcaaaaattgaatagaacacttaagagtttcttaacaaagtttgtatctta 76  Q
    ||||| || ||||||| || ||||||||||||||| ||||||| |||| |||||||||||    
T  47575524 tctgtcaattcaaaaagtgcatagaacacttaagaatttcttatcaaattttgtatctta 47575465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 4948147 - 4948110
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  4948147 ttagaagtctcttgcctgtgtgcttgagcattagaagt 4948110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 15366112 - 15366184
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctctt 187  Q
    ||||||||||| |||||||||||||||||| || ||||| || | |||||| || || || |||||||||||||    
T  15366112 taattgtttacacatctgattgtatatcaaatgcaagaa-aattcttttatctgtaaactcttagaagtctctt 15366184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 16819826 - 16819863
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  16819826 ttagaagtctcttgctttagtgcttgagcattggaagt 16819863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 17474401 - 17474450
Alignment:
Q  39 agaacacttaagagtttcttaacaaagtttgtatcttagaaattctaagt 88  Q
    ||||||||||  | ||||||| ||||||||||||||| ||||||||||||    
T  17474401 agaacacttacaaatttcttatcaaagtttgtatcttggaaattctaagt 17474450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 212
Target Start/End: Original strand, 17474479 - 17474512
Alignment:
Q  179 aagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||||||||||||||||||||||| ||||||||    
T  17474479 aagtctcttgcttgtgtgcttgagcgttggaagt 17474512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 23508925 - 23508888
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  23508925 ttagaagtctcttgctttagtgcttgagcattggaagt 23508888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 13977894 - 13977922
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  13977894 gaagtctcttgcttgtgtgcttgagcatt 13977922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 19889515 - 19889551
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaag 211  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  19889515 ttagaagtctcttgcttttgtgcttgagcataggaag 19889551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 32491418 - 32491446
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  32491418 gaagtctcttgcttgtgtgcttgagcatt 32491446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 2338 - 2374
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||||||||||||||| ||||||    
T  2338 tagaagtctcttgcttgtgtgcttgagcataggaagt 2374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 19662 - 19624
Alignment:
Q  174 tttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  19662 tttagaagtctcttgcttttgtgcttgagcataggaagt 19624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 8292 - 8326
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||| ||||||||||||||||||||||||||||||    
T  8292 gaagcctcttgcttgtgtgcttgagcattggaagt 8326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 4599 - 4627
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  4599 gaagtctcttgcttgtgtgcttgagcatt 4627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 956 - 993
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  956 ttagaagtctcttgctttagtgcttgagcattggaagt 993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1747 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1747
Description:

Target: scaffold1747; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 904 - 875
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcat 205  Q
    ||||||||||||||||||||||||||||||    
T  904 tagaagtctcttgcttgtgtgcttgagcat 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1745 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1745
Description:

Target: scaffold1745; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 507 - 536
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcat 205  Q
    ||||||||||||||||||||||||||||||    
T  507 tagaagtctcttgcttgtgtgcttgagcat 536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1551 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 884 - 956
Alignment:
Q  114 taattgtttactcatctgattgtatatcaagtgtaagaacaaatattttatttgcaatcttttagaagtctctt 187  Q
    ||||||||||| |||||||||||||||||| || ||||| || | |||||| || || || |||||||||||||    
T  884 taattgtttacacatctgattgtatatcaaatgcaagaa-aattcttttatctgtaaactcttagaagtctctt 956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 10276 - 10313
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  10276 ttagaagtctcttgctttagtgcttgagcattggaagt 10313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 58106 - 58069
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  58106 ttagaagtctcttgctttagtgcttgagcattggaagt 58069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 29283 - 29320
Alignment:
Q  175 ttagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||||  |||||||||||||||||||    
T  29283 ttagaagtctcttgctttagtgcttgagcattggaagt 29320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 5929 - 5901
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagca 204  Q
    |||||||||||||||||||||||||||||    
T  5929 tagaagtctcttgcttgtgtgcttgagca 5901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 3860 - 3824
Alignment:
Q  174 tttagaagtctcttgcttgtgtgcttgagcattggaa 210  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  3860 tttagaagtctcttgcttttgtgcttgagcataggaa 3824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 3985 - 4013
Alignment:
Q  178 gaagtctcttgcttgtgtgcttgagcatt 206  Q
    |||||||||||||||||||||||||||||    
T  3985 gaagtctcttgcttgtgtgcttgagcatt 4013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 22598 - 22562
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  22598 tagaagtctcttgcttttgtgcttgagcataggaagt 22562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 158695 - 158659
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  158695 tagaagtctctttcttgtgtgcttgagcataggaagt 158659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 244806 - 244842
Alignment:
Q  176 tagaagtctcttgcttgtgtgcttgagcattggaagt 212  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  244806 tagaactctcttgcttgtgtgcttgagcataggaagt 244842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University