View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1484_low_9 (Length: 529)
Name: NF1484_low_9
Description: NF1484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1484_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 44123168 - 44122946
Alignment:
| Q |
19 |
ccgccatgcctttcccgccttaaagacactgaatccacagatccactcgaatgtgtttccaactacttcgcacgtgcactaatggacttagagattcttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44123168 |
ccgccatgcctttcccgccttaaagacactgaatccacagatccactctaatgtgtttccaactacttcgcgcgtgcactaatggacttagagattcttg |
44123069 |
T |
|
| Q |
119 |
cagctttttatttaccataaatcaacaacattaacctaatttccagcattaagctaataattaacaaacctttgtcaacagattttttaaaacaacacta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44123068 |
cagctttttatttaccataaatcaacaacattaacctaatttccagcattaagctaataattaacaaacctttgtcaacagattttttaaaactacacta |
44122969 |
T |
|
| Q |
219 |
ataataattctggcatgcagttg |
241 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44122968 |
ataataattctggcatgcagttg |
44122946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 303 - 518
Target Start/End: Complemental strand, 44122884 - 44122666
Alignment:
| Q |
303 |
tgatagatgcaaggggcagaaatag---gagcaccatttcttgagcgagaggattaacgccggtgagtttacattgcgtgacgatgatattctgaaactg |
399 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44122884 |
tgatagatgcaaggggcagaaatagagagagcaccatttcttgagcgagaggattaacgccggtgagtttacattgcgtgacgatgatattctgaaactg |
44122785 |
T |
|
| Q |
400 |
atcgatctggctatgtacgagttctctttgagtagccaaaaacctctggaacgactcaacggaacttccaatctccggctccgataaaccgtcgttccag |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44122784 |
atcgatctggctatgtacgagttctctttgagaagccaaaaacctctggaacgactcaacggaacttccaatctccggctccgataaaccgtcgttccag |
44122685 |
T |
|
| Q |
500 |
agctccatcgttgatgatg |
518 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
44122684 |
agctccatcgttgatgatg |
44122666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 44123438 - 44123376
Alignment:
| Q |
23 |
catgcctttcccgccttaaagacactgaatccacagatccactcgaatgtgtttccaactacttc |
87 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
44123438 |
catgtctttcccgccttaaagatgctgaatccc--gatccactcgaatgtgtttacaactacttc |
44123376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University