View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14851_low_2 (Length: 668)
Name: NF14851_low_2
Description: NF14851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14851_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Complemental strand, 41527616 - 41526975
Alignment:
| Q |
19 |
tgtgcatcaagggctggttaccgaatggaggtgaggtttctattggattgaggnnnnnnnnnnnnnnnacaaatcagattgatgactgattatagatact |
118 |
Q |
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| T |
41527616 |
tgtgcatcaagggctggttaccgaatggaggtgaggtttctattggattgag-tttttttttttttttacaaatcagattgatgactgattatagacact |
41527518 |
T |
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| Q |
119 |
caattgtagtcttaatagaacatttacttccactttgtgctttaagaaaatttcgaaaacttacatttttatgctataagaagattgacaaattcataag |
218 |
Q |
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| T |
41527517 |
caattgtagtcttcatagaacatttacttccactttgtgctttaagaaaatttcgaaaacttacatttttatgctataagaagattgacaaattcataag |
41527418 |
T |
|
| Q |
219 |
atcaacggtgctcaatgtgaccatgtatccaaactccaccaatgggatgagccttgattgttgtattattgaatgttccatttatgcagaactgccaata |
318 |
Q |
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| T |
41527417 |
atcaacggtgctcaatgtgaccatgtatccaaactccaccaatgggatgagccttgattgttgtattattgaatgttccatttatgcagaactgccaata |
41527318 |
T |
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| Q |
319 |
tttaattaaattttctctctcttaactgtagttgcattgtttgaagaaaaatggaaagcagactacaaaaatggtttcgtattgtgcttaccacaggtat |
418 |
Q |
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| T |
41527317 |
tttaattaaattttctctctcttaactgtagttgcattgtttgaagaaaaatggaaagcagactacaaaaatggtttcgtattgtgcttaccacaggtat |
41527218 |
T |
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| Q |
419 |
ggaaccctcaatt-ataactaagaaagaattactc-ttatcttttcatcttgataatctgttatttgttgcagagctccaaatcccgacaatgttttgat |
516 |
Q |
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| T |
41527217 |
ggaaccctcaattaataactaagaaagaattactctttatcttttcatcttgataatctgttatttgttgcagagctccaaatcccgacaatgttttgat |
41527118 |
T |
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| Q |
517 |
tttgcaaacccctctcggggtaatttcaaccaaaagccttcttcaaaagagaaaagttgggtcaaggttaatctcgtctgccagaatagagaaagaagac |
616 |
Q |
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| T |
41527117 |
tttgcaaacccctctcggggtaatttcaaccaaaagccttcttcaaaagagaaaagttgggtcaaggttaatctcgtctgccagaatagagaaagaagat |
41527018 |
T |
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| Q |
617 |
aatcctattgatatcactgagcttgacccattctctgctgctc |
659 |
Q |
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| T |
41527017 |
aatcctattgatatcactgagcttgacccattctctgctgctc |
41526975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 478 - 594
Target Start/End: Original strand, 821035 - 821154
Alignment:
| Q |
478 |
tatttgttgcagagctccaaatcccgacaatgttttgattttgcaaacccctctcggggtaatttcaaccaaaagccttcttcaaaa---gagaaaagtt |
574 |
Q |
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||||| |||||| ||||| ||||| |||| |||||||||| | |||||||||| ||||| |||||||| |||| |||| | ||||| |||||||||| |
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| T |
821035 |
tatttcttgcagggctcccaatccagacactgttttgattatacaaacccctcatggggtcatttcaactaaaatccttatccaaaataagagaaaagtt |
821134 |
T |
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| Q |
575 |
gggtcaaggttaatctcgtc |
594 |
Q |
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| T |
821135 |
gggtcaagattaatttcgtc |
821154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 348 - 433
Target Start/End: Original strand, 820798 - 820883
Alignment:
| Q |
348 |
agttgcattgtttgaagaaaaatggaaagcagactacaaaaatggtttcgtattgtgcttaccacaggtatggaaccctcaattat |
433 |
Q |
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|||||||| ||| | | |||||||| || ||||| |||| |||||||| || |||||||| ||||||||||||| |||||||||| |
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| T |
820798 |
agttgcatagttcggaaaaaaatggtaaacagacaacaagaatggtttgttactgtgcttatcacaggtatggaatcctcaattat |
820883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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