View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14851_low_3 (Length: 384)
Name: NF14851_low_3
Description: NF14851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14851_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 184 - 361
Target Start/End: Original strand, 41906324 - 41906500
Alignment:
| Q |
184 |
ctcatgccactaatgaagaatgattttgtaaatttattcttaatttcttttcaaaagcaaataaaaccttgaagacacgaatggnnnnnnnnnnnngagg |
283 |
Q |
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| T |
41906324 |
ctcatgcaactaatgaagaatgattttgtaaatttattcttaatttctcttcaaaagcaaataaaaccttgaagacacggatggaaaaaaacat--gagg |
41906421 |
T |
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| Q |
284 |
taaatccatgtaaatttattaatatcgatgatgcctttgtaaataaagattatgggagt-ggtgattcacgtattgcac |
361 |
Q |
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| T |
41906422 |
taaatccatgtaaatttattaatatcgatgatgcctttgtaaataaagattatgggagtgggtgattcacgtattgcac |
41906500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 41906148 - 41906260
Alignment:
| Q |
10 |
gggagtattcagtatatttacctact--taatcagccccaaattagatatatcgttgtaaaaaatggtgtcctaaataataagttactatacaatgtcga |
107 |
Q |
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| T |
41906148 |
gggagtattcaacatatttacctactccttatcagccccaaattagatatatcgttgtaaaaaatggtgtcctaaataataagttactatacaatatcga |
41906247 |
T |
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| Q |
108 |
ttaattatcaatg |
120 |
Q |
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| T |
41906248 |
ttaattatcaatg |
41906260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 360
Target Start/End: Original strand, 2516303 - 2516379
Alignment:
| Q |
284 |
taaatccatgtaaatttattaatatcgatgatgcctttgtaaataaagattatgggagtggtgattcacgtattgca |
360 |
Q |
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| T |
2516303 |
taaatccaagtaaatttattaatattgataatgtcattatagataaagattctaggagtggtggttcgcttattgca |
2516379 |
T |
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