View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14851_low_4 (Length: 363)
Name: NF14851_low_4
Description: NF14851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14851_low_4 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0016 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 31 - 363
Target Start/End: Complemental strand, 33674558 - 33674226
Alignment:
| Q |
31 |
gtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttg |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674558 |
gtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatcctcaatgatgttg |
33674459 |
T |
|
| Q |
131 |
atgctactttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccgattcaccattccctct |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || || || |
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| T |
33674458 |
atgctactttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaaaattagagtcactgattcaccttttcccct |
33674359 |
T |
|
| Q |
231 |
aaaggaagaagaaggtgatgatcatagttatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaacttgcagcaaaaattagcc |
330 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33674358 |
aaaggatgaagaaggtgatgatcatagtcatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaacttgcagcaaaaattagcc |
33674259 |
T |
|
| Q |
331 |
gcaattcagtcaccttacaacaactcctgcaat |
363 |
Q |
| |
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|| |||||||||||||||||||||||| ||||| |
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| T |
33674258 |
gcgattcagtcaccttacaacaactcccgcaat |
33674226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 33663971 - 33663623
Alignment:
| Q |
18 |
caacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatc |
117 |
Q |
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|||||||||| | | |||||||||||||||||||||||| ||| | | || || ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33663971 |
caacagccccgccgccattaaattccacaacaaaaataataactatcaccgcggccgccaccacaacgatgtttccaccattcaaaaggttctagaaatt |
33663872 |
T |
|
| Q |
118 |
ctcaatgatgttgatgctactt---tttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccg |
214 |
Q |
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|| |||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||| | | |
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| T |
33663871 |
cttaatgatgttgattcttcttctttttcttctccttctcctttagtgacatttcctggatttggaaaaagtcccattgggaaaaaaattagagtcgctg |
33663772 |
T |
|
| Q |
215 |
attcaccattccctctaaaggaagaagaaggtgatgatcatagttatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaactt |
314 |
Q |
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|||||||||| || |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33663771 |
attcaccatttcccctaaaggatgaagaaggtgatgatcatagtcatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaactt |
33663672 |
T |
|
| Q |
315 |
gcagcaaaaattagccgcaattcagtcaccttacaacaactcctgcaat |
363 |
Q |
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||||||||||||||| || |||||||||||||| ||||||||| ||||| |
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| T |
33663671 |
gcagcaaaaattagctgcgattcagtcaccttataacaactcccgcaat |
33663623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 33685761 - 33685419
Alignment:
| Q |
18 |
caacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatc |
117 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||| ||| | | || || ||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
33685761 |
caacagccccactgccattaaattccacagcaaaaataataactatcaccgcggccgccaccacaacgatgtttcaaccattcaaaaggttctagaaatc |
33685662 |
T |
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| Q |
118 |
ctcaatgatgttgatg---ctactttttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccg |
214 |
Q |
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||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| | |
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| T |
33685661 |
ctcaatgatattgatgtttcttctttttcttctccttctcctttagtggcatttcctggttttggaaaaagtcccattgggaaaaaaattagagtcactg |
33685562 |
T |
|
| Q |
215 |
attcaccattccctctaaaggaagaagaaggtgatgatcatagttatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaactt |
314 |
Q |
| |
|
|||| ||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33685561 |
attctccatttcctctcaaggaagaagaaggggatgatcatagtcatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaaatt |
33685462 |
T |
|
| Q |
315 |
gcagcaaaaattagccgcaattcagtcaccttacaacaactcc |
357 |
Q |
| |
|
||| |||||||||| || |||||||||||||||||||||||| |
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| T |
33685461 |
gcaacaaaaattagttgcgattcagtcaccttacaacaactcc |
33685419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 33692988 - 33692649
Alignment:
| Q |
18 |
caacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatc |
117 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||| ||||||||||| |||||| |
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| T |
33692988 |
caacagccccgcgttcattaaattccacaacaaaaataaaaaccaccaccatggtcgccaccgcaacgatgtttccaccattcaaaaggttcttgaaatc |
33692889 |
T |
|
| Q |
118 |
ctcaatgatgttgatgctactt---tttcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccg |
214 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||| | |
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| T |
33692888 |
ctcaatgatgttgatgcttcttcattttcttctccttctcctttagtgacatttcctggatttggaaaaactcccattgggaaaaaaattagagtcactg |
33692789 |
T |
|
| Q |
215 |
attcaccattccctctaaaggaagaagaaggtgatgatcatagttatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaactt |
314 |
Q |
| |
|
|||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
33692788 |
attcgccatttcctctaaaggtagatgaaggtgatgatcatagttatgttgatgttgcagcggaagaatttattaaaaggttttataagaatcttaactt |
33692689 |
T |
|
| Q |
315 |
gcagcaaaaattagccgcaattcagtcaccttacaacaac |
354 |
Q |
| |
|
||| | ||||||| || |||| |||||||||| |||| |
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| T |
33692688 |
gcaagagaaattagtggcttttcaatcaccttacaccaac |
33692649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 86790 - 87132
Alignment:
| Q |
18 |
caacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatc |
117 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
86790 |
caacagccccgccgtcattaaattccataacaaaaataaaaaccaccatcatggccgccaccacaacgatgtttccaccattcaaaaggttctagaaatc |
86889 |
T |
|
| Q |
118 |
ctcaatgatgttgatgctactttt---tcttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccg |
214 |
Q |
| |
|
|| ||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |
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|
| T |
86890 |
cttaatgaagttgatgcttcttttttttcttctccttctcctttagtgacatttcctggatttggaaaaagtcccattggaaaaaaaattagagtcaccg |
86989 |
T |
|
| Q |
215 |
attcaccattccctctaaaggaagaagaaggtgatgatcatagttatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaactt |
314 |
Q |
| |
|
|||| || || |||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
86990 |
attctccgtttcctctaaaggtagatgaaggtgatgatcatagtcatgttgacgttgcagctgaagaatttattaaaaggttttataagaatctcaactt |
87089 |
T |
|
| Q |
315 |
gcagcaaaaattagccgcaattcagtcaccttacaacaactcc |
357 |
Q |
| |
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|| ||||||||||| | ||| |||||||||||||||||||| |
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|
| T |
87090 |
acaacaaaaattagcgtcgattaagtcaccttacaacaactcc |
87132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 103459 - 103804
Alignment:
| Q |
18 |
caacagccccacggtcattaaattccacaacaaaaataaaaaccaccgccatagctgccaccacaacgatgtttccaccatgcaaaaggttctagaaatc |
117 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||||| | || ||||||||||| | |||||||||||||| ||||||||| ||||||| |
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|
| T |
103459 |
caacagccccgccgtcattaaattccttaacaaaaataaaaaccatcaccgcggctgccaccacgatgatgtttccaccattcaaaaggttttagaaatt |
103558 |
T |
|
| Q |
118 |
ctcaatgatgttgatgctacttttt---cttctccttctcctttagtggcatttcctggatttggaaagagtcccattgggaaaaagattagagtcaccg |
214 |
Q |
| |
|
|||||| | ||||||||| ||| || |||||||||||||||||||| |||||||||| |||||||| |||||| |||| ||||| |||||||||| | |
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|
| T |
103559 |
ctcaataaagttgatgcttcttctttctcttctccttctcctttagtgacatttcctgggtttggaaaaagtcccgttggaaaaaaatttagagtcactg |
103658 |
T |
|
| Q |
215 |
attcaccattccctctaaaggaagaagaaggtgat---gatcatagttatgttgatgttgcagctgaagaatttattaaaaggttttataaaaatctcaa |
311 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||| || |
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|
| T |
103659 |
attctccatttcctctaaaggaagaagaaggtgatgatgatcatagtcatgttgatgttgcggctgaagaatttattaaaaagttttataagaatcttaa |
103758 |
T |
|
| Q |
312 |
cttgcagcaaaaattagccgcaattcagtcaccttacaacaactcc |
357 |
Q |
| |
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|||||| |||||||| || ||||||||||||||||||||||||||| |
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|
| T |
103759 |
cttgcaacaaaaattggcggcaattcagtcaccttacaacaactcc |
103804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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