View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14851_low_6 (Length: 268)

Name: NF14851_low_6
Description: NF14851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14851_low_6
NF14851_low_6
[»] chr8 (3 HSPs)
chr8 (16-258)||(6144882-6145124)
chr8 (49-176)||(14317852-14317979)
chr8 (49-176)||(26986226-26986353)
[»] chr4 (2 HSPs)
chr4 (39-180)||(3423534-3423676)
chr4 (49-176)||(35091755-35091882)
[»] chr6 (4 HSPs)
chr6 (39-180)||(21938392-21938533)
chr6 (49-176)||(21276613-21276740)
chr6 (39-179)||(12910112-12910248)
chr6 (39-179)||(12935775-12935911)
[»] chr3 (7 HSPs)
chr3 (49-176)||(5480725-5480852)
chr3 (49-176)||(4050648-4050775)
chr3 (49-176)||(6857292-6857419)
chr3 (49-176)||(8459152-8459279)
chr3 (49-176)||(10590532-10590659)
chr3 (49-176)||(10677288-10677415)
chr3 (49-176)||(31080744-31080871)
[»] chr7 (6 HSPs)
chr7 (49-176)||(12852516-12852643)
chr7 (49-176)||(14611158-14611285)
chr7 (49-176)||(26051861-26051988)
chr7 (49-176)||(26061220-26061347)
chr7 (57-180)||(20461927-20462050)
chr7 (61-123)||(20484663-20484725)
[»] chr5 (4 HSPs)
chr5 (49-176)||(9876777-9876904)
chr5 (49-176)||(39904685-39904812)
chr5 (94-180)||(9852139-9852225)
chr5 (90-180)||(43540044-43540133)
[»] chr1 (3 HSPs)
chr1 (49-176)||(28575137-28575264)
chr1 (39-177)||(49055473-49055611)
chr1 (39-173)||(49060572-49060706)
[»] chr2 (1 HSPs)
chr2 (72-177)||(8366499-8366604)
[»] scaffold0007 (1 HSPs)
scaffold0007 (72-168)||(216966-217062)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 6145124 - 6144882
Alignment:
Q  16 aacacattgaaaatattataattgatgtggtataagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  6145124 aacacattgaaaatattataattgatgtggtataagcccatatttaattgatgatcaatggtggaaactcaacgcacacttgagtagcatcaagtcttag 6145025  T
Q  116 gtttaatgatgaaaatacactatttgtgtggttgaaatacttgatgatagatacatcccaaggggcgctgcggtaaaaatattttgaccataacaagaaa 215  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| ||||||    
T  6145024 gtttaatgatgaaaatacactatttatgtggttgaaatacttgatgatagatacatcccaaggggcgcaggggtaaaaatactttgaccataaaaagaaa 6144925  T
Q  216 aatagtaggatattttccttttaatgaacatataacatatatt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6144924 aatagtaggatattttccttttaatgaacatataacatatatt 6144882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 14317852 - 14317979
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  14317852 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 14317951  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  14317952 gtagtacttgacaatagatacatcccaa 14317979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 26986226 - 26986353
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  26986226 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 26986325  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  26986326 gtagtacttgacaatagatacatcccaa 26986353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 180
Target Start/End: Original strand, 3423534 - 3423676
Alignment:
Q  39 gatgtggtataagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactat 138  Q
    ||||||||| ||||||| || || ||||| || ||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||    
T  3423534 gatgtggtacaagcccaaatctatttgatcatcaatggtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactat 3423633  T
Q  139 ttgtgtggttgaaatacttgatgatagat-acatcccaagggg 180  Q
    | | ||| ||||| ||||||||||| ||| |||||||||||||    
T  3423634 tagagtgattgaagtacttgatgatcgataacatcccaagggg 3423676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 35091882 - 35091755
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  35091882 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 35091783  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  35091782 gtagtacttgacaatagatacatcccaa 35091755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 21938533 - 21938392
Alignment:
Q  39 gatgtggtataagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactat 138  Q
    ||||||||| || |||| || |||||||| |  ||||||||||||||||  |||||||||||||||||||||||| |||| |||||||||| ||||||||    
T  21938533 gatgtggtacaaacccaaatctaattgatcaccaatggtggaaactcaatccacacttgagtagcatcaagtcttgggttcaatgatgaaagtacactat 21938434  T
Q  139 ttgtgtggttgaaatacttgatgatagatacatcccaagggg 180  Q
    |   ||| ||||| |||||||  |||||||||||||||||||    
T  21938433 taaagtgattgaagtacttgacaatagatacatcccaagggg 21938392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 21276740 - 21276613
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  21276740 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 21276641  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  21276640 gtagtacttgacaatagatacatcccaa 21276613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 12910248 - 12910112
Alignment:
Q  39 gatgtggtataagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactat 138  Q
    |||| |||||||||||| || |||||||| |  |||||||||||||||||    ||||||||| ||||||||||| |||  |||| ||||  || |||||    
T  12910248 gatgcggtataagcccaaatctaattgatcaccaatggtggaaactcaac----acttgagtaacatcaagtcttgggtgcaatggtgaaggtatactat 12910153  T
Q  139 ttgtgtggttgaaatacttgatgatagatacatcccaaggg 179  Q
    | | ||| ||||| |||||||  |||||| |||||||||||    
T  12910152 tagagtgattgaagtacttgacaatagatgcatcccaaggg 12910112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 12935911 - 12935775
Alignment:
Q  39 gatgtggtataagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactat 138  Q
    |||| |||||||||||| || |||||||| |  |||||||||||||||||    ||||||||| ||||||||||| |||| |||| ||||  || |||||    
T  12935911 gatgcggtataagcccaaatctaattgatcaccaatggtggaaactcaac----acttgagtaacatcaagtcttgggttcaatggtgaaggtatactat 12935816  T
Q  139 ttgtgtggttgaaatacttgatgatagatacatcccaaggg 179  Q
    | | ||| ||||| |||||||  |||||| |||| ||||||    
T  12935815 tagagtgattgaagtacttgacaatagatgcatctcaaggg 12935775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 5480725 - 5480852
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    ||||||||||||||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  5480725 aagcccatatttaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 5480824  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  5480825 gtagtacttgacaatagatacatcccaa 5480852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 4050775 - 4050648
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  4050775 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 4050676  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  4050675 gtagtacttgacaatagatacatcccaa 4050648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 6857292 - 6857419
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  6857292 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 6857391  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  6857392 gtagtacttgacaatagatacatcccaa 6857419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 8459279 - 8459152
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  8459279 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 8459180  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  8459179 gtagtacttgacaatagatacatcccaa 8459152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 10590532 - 10590659
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  10590532 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 10590631  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  10590632 gtagtacttgacaatagatacatcccaa 10590659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 10677288 - 10677415
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  10677288 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 10677387  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  10677388 gtagtacttgacaatagatacatcccaa 10677415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 31080744 - 31080871
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  31080744 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 31080843  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  31080844 gtagtacttgacaatagatacatcccaa 31080871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 12852643 - 12852516
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  12852643 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 12852544  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  12852543 gtagtacttgacaatagatacatcccaa 12852516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 14611285 - 14611158
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  14611285 aagcccatatctaattgattacgaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 14611186  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  14611185 gtagtacttgacaatagatacatcccaa 14611158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 26051988 - 26051861
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  26051988 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 26051889  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  26051888 gtagtacttgacaatagatacatcccaa 26051861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 26061347 - 26061220
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  26061347 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 26061248  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  26061247 gtagtacttgacaatagatacatcccaa 26061220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 20461927 - 20462050
Alignment:
Q  57 atttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggttgaaatact 156  Q
    ||||||||||| || |||||||||| ||||   || |||||||||||||||  ||||| ||| ||||  |||| ||||||||| | ||| ||||| ||||    
T  20461927 atttaattgatcatcaatggtggaatctcagtccatacttgagtagcatcacatcttatgttcaatggagaaagtacactattagagtgattgaagtact 20462026  T
Q  157 tgatgatagatacatcccaagggg 180  Q
    ||| |||||||||||| |||||||    
T  20462027 tgacgatagatacatctcaagggg 20462050  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 20484663 - 20484725
Alignment:
Q  61 aattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatg 123  Q
    ||||||| || |||||||||| |||||| || ||||||||||||||| |||||||||| ||||    
T  20484663 aattgatcatcaatggtggaatctcaacccatacttgagtagcatcacgtcttaggttcaatg 20484725  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 9876777 - 9876904
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  9876777 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 9876876  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  9876877 gtagtacttgacaatagatacatcccaa 9876904  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 39904812 - 39904685
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| |||||  |||||||| | ||  ||    
T  39904812 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagcacactattagagtaatt 39904713  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  ||||||| |||||||    
T  39904712 gtagtacttgacaatagatagatcccaa 39904685  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 9852225 - 9852139
Alignment:
Q  94 cttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggttgaaatacttgatgatagatacatcccaagggg 180  Q
    |||||||||||||||||  | |||| |||| ||||| ||||||||| | ||| ||||| ||||||| ||||||||||||||||||||    
T  9852225 cttgagtagcatcaagtactgggttcaatggtgaaagtacactattagagtgattgaagtacttgacgatagatacatcccaagggg 9852139  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 43540044 - 43540133
Alignment:
Q  90 cacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggttgaaatacttgatgatagatacatcccaagggg 180  Q
    |||||||||||| |||||||| || |||| |||| ||||| ||||||||| | ||| ||||| ||||||| |||||| |||||||||||||    
T  43540044 cacacttgagtaacatcaagttttgggttcaatggtgaaagtacactattagagtgattgaagtacttgacgataga-acatcccaagggg 43540133  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 28575264 - 28575137
Alignment:
Q  49 aagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggtt 148  Q
    |||||||||| |||||||| |  ||| ||||||||||||| |||||||||||||||||||||||| |||| |||| ||||| ||||||||| | ||  ||    
T  28575264 aagcccatatctaattgattaccaatagtggaaactcaacccacacttgagtagcatcaagtcttgggttcaatggtgaaagtacactattagagtaatt 28575165  T
Q  149 gaaatacttgatgatagatacatcccaa 176  Q
    | | |||||||  |||||||||||||||    
T  28575164 gtagtacttgacaatagatacatcccaa 28575137  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 177
Target Start/End: Original strand, 49055473 - 49055611
Alignment:
Q  39 gatgtggtataagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactat 138  Q
    ||||||||| ||||| |||| || ||||| || ||||| ||||| ||||| ||| ||||| || |||||| ||||  ||| |||||| ||| ||||||||    
T  49055473 gatgtggtacaagccaatatctagttgatcatcaatggaggaaaatcaactcacccttgaataacatcaattcttgagttcaatgattaaagtacactat 49055572  T
Q  139 ttgtgtggttgaaatacttgatgatagatacatcccaag 177  Q
    | |  || ||||| |||||||  ||||||||||||||||    
T  49055573 tagaatgattgaagtacttgacaatagatacatcccaag 49055611  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 49060572 - 49060706
Alignment:
Q  39 gatgtggtataagcccatatttaattgataattaatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactat 138  Q
    ||||||||| ||||| |||| || ||||| || ||||||||||| ||||| ||| ||||| || |||||| ||||  ||| |||||| ||| ||||||||    
T  49060572 gatgtggtacaagccaatatctagttgatcatcaatggtggaaaatcaactcacccttgaataacatcaaatcttgagttcaatgattaaagtacactat 49060671  T
Q  139 ttgtgtggttgaaatacttgatgatagatacatcc 173  Q
    | |  || ||||| |||||||  ||||||||||||    
T  49060672 tagaatgattgaagtacttgacaatagatacatcc 49060706  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 8366499 - 8366604
Alignment:
Q  72 aatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggttgaaatacttgatgatagatacat 171  Q
    ||||||||||||||||| |||||| |||||||||||| ||||  ||| |||| |||||||| ||||||   ||| ||||| ||  ||| |||||||||||    
T  8366499 aatggtggaaactcaacccacactcgagtagcatcaaatcttgagttcaatggtgaaaatatactattatagtgtttgaagtatctgacgatagatacat 8366598  T
Q  172 cccaag 177  Q
    ||||||    
T  8366599 cccaag 8366604  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 216966 - 217062
Alignment:
Q  72 aatggtggaaactcaacgcacacttgagtagcatcaagtcttaggtttaatgatgaaaatacactatttgtgtggttgaaatacttgatgatagata 168  Q
    ||||||||||||||||| ||| |||||||| ||||||||||| |||| ||   ||||| || |||||| |  || ||||| ||||||| ||||||||    
T  216966 aatggtggaaactcaacccacgcttgagtatcatcaagtcttgggttcaacagtgaaagtaaactattagattgattgaagtacttgaagatagata 217062  T

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