View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14851_low_8 (Length: 216)
Name: NF14851_low_8
Description: NF14851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14851_low_8 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 21833247 - 21833050
Alignment:
| Q |
19 |
tgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggt |
118 |
Q |
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| T |
21833247 |
tgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggt |
21833148 |
T |
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| Q |
119 |
gaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggaga |
216 |
Q |
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| T |
21833147 |
gaatcttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggaga |
21833050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 10615808 - 10615955
Alignment:
| Q |
28 |
tgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctttt |
127 |
Q |
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| T |
10615808 |
tgatgttcaatgatgggaaacgagagattttgcggagaagagcgtcaaggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatctttt |
10615907 |
T |
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| Q |
128 |
gaagaggggacggatgagagggcgtgttggattgaggacagtcagtga |
175 |
Q |
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| T |
10615908 |
aaagaggaggcaaaggaaagggcgtgttggattgaagatagtgagtga |
10615955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 6417187 - 6417375
Alignment:
| Q |
28 |
tgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctttt |
127 |
Q |
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| T |
6417187 |
tgatgttcaatgatggaaaacgagagattttacggagaagagcatcaaggtcgccatgaaagcgtgtgaggttgagggaattaaggtttgtgaatctttt |
6417286 |
T |
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| Q |
128 |
gaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggaga |
216 |
Q |
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| T |
6417287 |
aaagaggcgacaaaggaaagggcgtgttggattgaggatagtcagtgtgaatcgaattcggttggtgatggagaggagttgcttggaga |
6417375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 6588240 - 6588179
Alignment:
| Q |
19 |
tgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtca |
80 |
Q |
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| T |
6588240 |
tgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtca |
6588179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 13469610 - 13469463
Alignment:
| Q |
28 |
tgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaacctttt |
127 |
Q |
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| T |
13469610 |
tgatgttcaatgatgagaagcgagagattttgcggagaagagcgtcaaggtccccatggaagcgtgtgaggttgagtgaattaaggtttgtgaatctttt |
13469511 |
T |
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| Q |
128 |
gaagaggggacggatgagagggcgtgttggattgaggacagtcagtga |
175 |
Q |
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| T |
13469510 |
aaagaggcgacaaaggaaagggtgtgttggattgaggatagtgagtga |
13469463 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 30827961 - 30828001
Alignment:
| Q |
93 |
gagaggttaagggaggtaagattggtgaaccttttgaagag |
133 |
Q |
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| T |
30827961 |
gagaggtcgagggaggtgagattggtgaaccttttgaagag |
30828001 |
T |
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