View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14852_high_1 (Length: 860)
Name: NF14852_high_1
Description: NF14852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14852_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 112 - 844
Target Start/End: Complemental strand, 33790139 - 33789400
Alignment:
| Q |
112 |
cttgttggagtgatgaatttcttgatgatatgtgtcagttttacatatgtatttttataaattattaatatcatacttcttnnnnnnnn-ttattaatat |
210 |
Q |
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| T |
33790139 |
cttgttggagtgatgaatttcttgatgatatgtgtcacttttacatatgtatttttataaattattaatatcatacttcttaaaaaaaaattattaatat |
33790040 |
T |
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| Q |
211 |
cataagaaagaaaaaataacttgcattttaactggtaaattaaatatatttgcaaagaaaacattcatgtatgatatattttgtagatcatctcaaattt |
310 |
Q |
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| T |
33790039 |
cataagaaagaaaaaataacttgcattttaactggtaaattaattatattttcaaagaaaacattcatgtatgaaatattttgtagatcatctcaaattt |
33789940 |
T |
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| Q |
311 |
aaggacaaataattgtttggaaagagagtaaaactaatgtatatatatcattggagtggatt------ctctcaaatgannnnnnnngaaaaataacgtg |
404 |
Q |
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| T |
33789939 |
agggacaaataattgtttggaaagagagtaaaactaatgtatatat--cattggagtggattaatattctctaaaatgaatttttttgaaaaataacgtg |
33789842 |
T |
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| Q |
405 |
gagattttgaccattgatctctacattattgataatgtaaagattaatggtcaaattttttgtaatgtttcctcagaggatccattttcataatgatatg |
504 |
Q |
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| T |
33789841 |
gagatcttgaccattgatctctacattattgataatgtagagattaatggtcaaaatttttgtaatgttttctcagaggatccattttcataatgatatg |
33789742 |
T |
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| Q |
505 |
attaattaggttagtttggagcttactctaacaaagcaatcatggaagtgcattcggagcaaggcagcagtcatggatctatcttgattaaaacttctct |
604 |
Q |
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| T |
33789741 |
attaattaggttagtttggagcttactctgacaaagcaatcatggaagtgcatacggagcaaggcagcagtcatggatctatcttgattaaaacttctct |
33789642 |
T |
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| Q |
605 |
caacaacttgacgtacaatcaactctgctcttgggcagctagagctataaaatccaactttgagatcaccaaatgcaaagggaaagagcaagaacattaa |
704 |
Q |
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| T |
33789641 |
caacaacttgacgtacaatcaactctgctcttgggcagctagagctataaaatccaactttgagatcaccaaatgcaaagggaaagagcaagaacattaa |
33789542 |
T |
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| Q |
705 |
gaagattaataaaatggttggcttcattttggatttgttgctatgcgtagtacttgctttatgaagttagttgttgtggattagtatttgacaatggaag |
804 |
Q |
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| T |
33789541 |
gaagattaataaaattgttggcttcattttggatttgttgctatgcgtagtacttgctttatgaagttagttgttgtggattagtatttgacaatggaag |
33789442 |
T |
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| Q |
805 |
ggaaatacatctata--tatagtggggattgaaagaaatttt |
844 |
Q |
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| T |
33789441 |
ggaaatacatctatatatatagtggggattgaaagaaatttt |
33789400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 33789785 - 33789835
Alignment:
| Q |
408 |
attttgaccattgatctctacattattgataatgtaaagattaatggtcaa |
458 |
Q |
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| T |
33789785 |
attttgaccattaatctctacattatcaataatgtagagatcaatggtcaa |
33789835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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