View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14852_high_1_N (Length: 374)
Name: NF14852_high_1_N
Description: NF14852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14852_high_1_N |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 12 - 374
Target Start/End: Complemental strand, 2090577 - 2090215
Alignment:
| Q |
12 |
aaggctatgtgtgtctcgcactcatggcgtaatcgcattctaatcacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttccc |
111 |
Q |
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| T |
2090577 |
aaggctatgtgtgtctcgcactcatggcgtaatcgcatcctaaccacaacacttccaaaggagtatccattacaacctttggtgtttcctcacctttccc |
2090478 |
T |
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| Q |
112 |
ctcacccattttatggcctagaacaattttttaattggtgctcattagtgatgtgttgcaatgtcagttcaagaaatattatagacacatgcaatgggtt |
211 |
Q |
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| T |
2090477 |
ctcacccattttatggcctacaacaattttttaattggtgctcattagtgatgtgttgcaatgtaagttcaagaaatattatagacacatgcaatgggtt |
2090378 |
T |
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| Q |
212 |
attcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctatt |
311 |
Q |
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| T |
2090377 |
attcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaaacaatgtgtggctatt |
2090278 |
T |
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| Q |
312 |
ttgaagccttctggacaattttttggaggaaattcatatgctgctctggcatatgacccttca |
374 |
Q |
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| T |
2090277 |
ttgaagccttctggacaattttttggaggaaattcatatgctgctctggtatatgacccttca |
2090215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 371
Target Start/End: Original strand, 2878944 - 2879119
Alignment:
| Q |
196 |
acacatgcaatgggttattcttgttttgccataaggatggtcaagctaggaatattgtgcgtggtgtctaccactactatgtcatgaatcctataagaaa |
295 |
Q |
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| T |
2878944 |
acacatgcaatggcttactattgttttgccacaatgatggtgaggctaccaacatcttgcgtggtgtctattattactatgtcctgaatccagtcacaaa |
2879043 |
T |
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| Q |
296 |
acaatgtgtggctattttgaagccttctggacaattttttggaggaaattcatatgctgctctggcatatgaccct |
371 |
Q |
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| T |
2879044 |
acaatgtgtgactgttatgaagcccataggacaaacctctggtgggtattcatatgctgctctggcatatgaccct |
2879119 |
T |
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