View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_high_1 (Length: 499)
Name: NF14853_high_1
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 10 - 484
Target Start/End: Complemental strand, 23467072 - 23466598
Alignment:
| Q |
10 |
aagaattgatgcagaagaaagaggagcaagagaatttaaatcagaagttgcagctatagctaatgttcatcatgtgaatcttgtgagactttttgggtat |
109 |
Q |
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| T |
23467072 |
aagaattgatgcagaagaaagaggagcaagagaatttaaatcagaagttgcagctatagctaatgttcatcatgtgaatcttgtgagactttttgggtat |
23466973 |
T |
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| Q |
110 |
tgtaattcttcttcagctcctaggtaccttgtttatgattatgtatcaaatggatcattagattgttggattttcccgaaaagggattcgcaaaggcgtc |
209 |
Q |
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| T |
23466972 |
tgtaattcttcttcagctcctaggtaccttgtttatgattatgtatcaaatggatcattagattgttggattttcccgaaaagggattcgcaaaggcgtc |
23466873 |
T |
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| Q |
210 |
cacgtcctggtggatgcttgtcgtggaacttgaggtataaagttgcaattgacgttgctaaaggactcgcatatcttcaccacgattgcagatcaaggat |
309 |
Q |
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| T |
23466872 |
cacgtcctggtggatgcttgtcgtggaacttgaggtataaagttgcaattgacgttgctaaaggactcgcatatcttcaccacgattgcagatcaaggat |
23466773 |
T |
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| Q |
310 |
cttacatcttgatataaagccagaaaatattctcttggacgagacttttagagcacttgtttcagatttcggtcttgcaaagctaactggtaaagacgaa |
409 |
Q |
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| T |
23466772 |
cttacatcttgatataaagccagaaaatatactcttggatgagacttttagagcacttgtttcagatttcggccttgcaaagttaactggtaaagacgaa |
23466673 |
T |
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| Q |
410 |
agtcaagcggtgtctacaataagaggaacacgaggttatatggcacctgaatggcttttagaaaagggtatttca |
484 |
Q |
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| T |
23466672 |
agtcaagcggtgtctacaataagaggaacaagaggttatatggcaccagaatggcttttagaaaagggtatttca |
23466598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 46789338 - 46789511
Alignment:
| Q |
10 |
aagaattgatgcagaagaaagaggagcaagagaatttaaatcagaagttgcagctatagctaatgttcatcatgtgaatcttgtgagactttttgggtat |
109 |
Q |
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||||||| ||| ||||||||||| | ||||||||||| |||||||||| |||||||||||| |||||| ||||| |||||||||||||||||||| ||| |
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| T |
46789338 |
aagaattcatggtgaagaaagaggtgaaagagaatttagatcagaagtttcagctatagctagtgttcaacatgttaatcttgtgagactttttggttat |
46789437 |
T |
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| Q |
110 |
tgtaattcttcttcagctcctaggtaccttgtttatgattatgtatcaaatggatcattagattgttggatttt |
183 |
Q |
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| T |
46789438 |
tgtaattctccaacaccacctaggtatcttgtttatgagtttattccaaatggttcattggattgttggatttt |
46789511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 463
Target Start/End: Original strand, 47193735 - 47193771
Alignment:
| Q |
427 |
aataagaggaacacgaggttatatggcacctgaatgg |
463 |
Q |
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| T |
47193735 |
aataagagggacaagaggttatatggcacctgaatgg |
47193771 |
T |
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