View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_high_13 (Length: 278)
Name: NF14853_high_13
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 36183065 - 36183261
Alignment:
| Q |
10 |
agtagcaaaggtgggacgaacaataacaacagacatgttttccttgaaagtttctacaagcatttctcccattgcttttgtaaacacatatgtgtttggc |
109 |
Q |
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| T |
36183065 |
agtaacaatggtgggacgaacaataacaacagacatgttttccttgaaagtttctacaagcatttctcccattgcttttgtaaacacatatgtgtttggc |
36183164 |
T |
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| Q |
110 |
catccatatttagtagctctaataaagtcaatcatgcaa-------------atattcaactttttgtattaattagaattcacaatcatgcaaaaa |
193 |
Q |
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| T |
36183165 |
catccatatttagtagctctaataaagtcaatcatgcaaaaaaaaaccaaacatattcaactttttgtatttattagaattcacaatcatgcaaaaa |
36183261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 36183739 - 36183840
Alignment:
| Q |
177 |
tcacaatcatgcaaaaaattgagagtttcacttattattacctttctatacccaagtccttcatggccacttcaatatcatgttcagttgctccctgtgc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36183739 |
tcacaatcatgcaaaaaattgagagtttcacttattattacctttccatacctaagtccttcatggccacttcaatatcatgttcagttgttccctgtgc |
36183838 |
T |
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| Q |
277 |
ct |
278 |
Q |
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| T |
36183839 |
ct |
36183840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 14223283 - 14223336
Alignment:
| Q |
63 |
ctacaagcatttctcccattgcttttgtaaacacatatgtgtttggccatccat |
116 |
Q |
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| T |
14223283 |
ctacaagcatttctcccattgcttttgtaaatacataggtgtttggccatccat |
14223336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 14229888 - 14229941
Alignment:
| Q |
63 |
ctacaagcatttctcccattgcttttgtaaacacatatgtgtttggccatccat |
116 |
Q |
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| T |
14229888 |
ctacaagcatttctcccattgcttttgtaaatacataggtgtttggccatccat |
14229941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 19505727 - 19505638
Alignment:
| Q |
29 |
acaataacaacagacatgttttccttgaaagtttctacaagcatttctcccattgcttttgtaaacacatatgtgtttggccatccatat |
118 |
Q |
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| T |
19505727 |
acaataacaatggacaatttttccttcatagttcccactagcatttctcccattgcctttgtaaaaacatatgtgtttggccatccatat |
19505638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 19481194 - 19481141
Alignment:
| Q |
65 |
acaagcatttctcccattgcttttgtaaacacatatgtgtttggccatccatat |
118 |
Q |
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| T |
19481194 |
acaagcatttctcccattgcttttgtgaatacgtatgtgtttggccatccatat |
19481141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 19532522 - 19532473
Alignment:
| Q |
67 |
aagcatttctcccattgcttttgtaaacacatatgtgtttggccatccat |
116 |
Q |
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| T |
19532522 |
aagcatctctcccattgcttttgtgaatacatatgtgtttggccaaccat |
19532473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 30891005 - 30890952
Alignment:
| Q |
63 |
ctacaagcatttctcccattgcttttgtaaacacatatgtgtttggccatccat |
116 |
Q |
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| T |
30891005 |
ctacaagcatttctcccattgcttttgtgaatacatatgtgtttggccaaccat |
30890952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 30895830 - 30895777
Alignment:
| Q |
63 |
ctacaagcatttctcccattgcttttgtaaacacatatgtgtttggccatccat |
116 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||| |||| |
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| T |
30895830 |
ctacaagcatttctcccattgcttttgtgaatacatatgtgtttggccaaccat |
30895777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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