View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_high_15 (Length: 237)
Name: NF14853_high_15
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 2150796 - 2150577
Alignment:
| Q |
1 |
tttagctaccttgacgacgacgttatttctacgaaccaagatgtatcattctaccattgaggatgcacaaacatacatgggagcactatttttcactgtc |
100 |
Q |
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| T |
2150796 |
tttagctaccttgacgacgacgttatttctgcgaaccaagatgtatcattctaccattgaggatgcacaaacatacatgggagcactatttttcactgtc |
2150697 |
T |
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| Q |
101 |
acagtagcaatgttcaatggaatatcagagctgaatatgactatcatgaaacttcctatcttttacaagcaaagagatcttcttttctatccttcatggg |
200 |
Q |
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| T |
2150696 |
acagtagcaatgttcaatggaatatcagagctgaatatgactatcatgaaacttcctatcttttacaagcaaagagatcttcttttctatccttcatggg |
2150597 |
T |
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| Q |
201 |
cttattctcttccaccatgg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
2150596 |
cttattctcttccaccatgg |
2150577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 74 - 220
Target Start/End: Complemental strand, 2163147 - 2163001
Alignment:
| Q |
74 |
tacatgggagcactatttttcactgtcacagtagcaatgttcaatggaatatcagagctgaatatgactatcatgaaacttcctatcttttacaagcaaa |
173 |
Q |
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| T |
2163147 |
tacatgggagcactatttttcacagtcacagtagcaatgttcaatggaatatcagaactaaatatgacacttatgaaacttcctgtcttttacaagcaaa |
2163048 |
T |
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| Q |
174 |
gagatcttcttttctatccttcatgggcttattctcttccaccatgg |
220 |
Q |
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| T |
2163047 |
gagatcttcttttctatccttcatgggcttattctcttccaccatgg |
2163001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 8537126 - 8536994
Alignment:
| Q |
74 |
tacatgggagcactatttttcactgtcaca---gtagcaatgttcaatggaatatcagagctgaatatgactatcatgaaacttcctatcttttacaagc |
170 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||| | ||||||||| || |||||||||||| |
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| T |
8537126 |
tacatgggagcactatttttcacactcacatgagtagcaatgttcaatggaatatcagaattgaatacgacacttatgaaactttctgtcttttacaagc |
8537027 |
T |
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| Q |
171 |
aaagagatcttcttttctatccttcatgggctt |
203 |
Q |
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||||||||||||| |||||||||||| |||||| |
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| T |
8537026 |
aaagagatcttctcttctatccttcacgggctt |
8536994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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