View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_high_18 (Length: 216)
Name: NF14853_high_18
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 30654397 - 30654216
Alignment:
| Q |
17 |
atacttggctggggttgcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcaaacaagctgaaagaag |
116 |
Q |
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| T |
30654397 |
atacttggctggggtggcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcagacaagctgaaagaag |
30654298 |
T |
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| Q |
117 |
aggagacttgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttccttttt |
198 |
Q |
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| T |
30654297 |
gggagacttgcatgacatacgaatatgcactgatgcgcctgttatatctcacctattatttgcaaatgattgtttccttttt |
30654216 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 12716813 - 12716746
Alignment:
| Q |
125 |
tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc |
192 |
Q |
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| T |
12716813 |
tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc |
12716746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 12778044 - 12777977
Alignment:
| Q |
125 |
tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc |
192 |
Q |
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| T |
12778044 |
tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc |
12777977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 48028076 - 48028035
Alignment:
| Q |
158 |
ttatatctcacctattatttgcaaatgattgtttcctttttt |
199 |
Q |
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| T |
48028076 |
ttatatctcacctattatttgctgatgattgtttcctctttt |
48028035 |
T |
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