View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_high_5 (Length: 387)
Name: NF14853_high_5
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 2151253 - 2150905
Alignment:
| Q |
1 |
actttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccatttgacaagtctaaatt |
100 |
Q |
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| T |
2151253 |
actttgtcactgtcaaggattttgctcgagccttcgaattatttcacataggcaaacaacttggagaagagctggccgatccatttgacaagtctaaatt |
2151154 |
T |
|
| Q |
101 |
tcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgcttatgaagagaaattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151153 |
tcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgcttatgaagagaaattct |
2151054 |
T |
|
| Q |
201 |
tttgtctacatattcaaagccacacaagtaagtctaaatttctgattttaaaacaatattctatgtccaaaaatctgatcgagtaaaggactcctcgtgc |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2151053 |
tttgtctacatattcaaagccacacaagtgagtctaaatttctgattttaaaacaatattctatgtccaaaaatcttatcgagtaaaggactcctcgtgc |
2150954 |
T |
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| Q |
301 |
agttattcataaaaatgttaaataaagtgtttcatgtgtgggcaccacc |
349 |
Q |
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| T |
2150953 |
agttattcataaaaatgttaaataaagtgtttcatgtgtgggcaccacc |
2150905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 2163529 - 2163303
Alignment:
| Q |
3 |
tttgtcactgtcaaggattttgctcgagccttcgaattatttcacgtaggcaaacaacttggagaagagctggccgatccatttgacaagtctaaatttc |
102 |
Q |
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| T |
2163529 |
tttgttactgtcaaggattttgccgaagcatttcagatatttcacataggtcaaaaacttggagatgagctagccaatccttttgacaagtcgaaatgcc |
2163430 |
T |
|
| Q |
103 |
attcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaagggcttgtgctagcagagagttattgcttatgaagagaaattcttt |
202 |
Q |
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| T |
2163429 |
atgcaagtgtcttgaccacaaagaaatacggtgttaacaagaaggagcttctgaaggcttgtgctagcagagaatttttgcttatgaagcgaaattcgtt |
2163330 |
T |
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| Q |
203 |
tgtctacatattcaaagccacacaagt |
229 |
Q |
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|||| |||| ||||||| ||| ||||| |
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| T |
2163329 |
tgtccacattttcaaagtcactcaagt |
2163303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 4302471 - 4302604
Alignment:
| Q |
58 |
aacttggagaagagctggccgatccatttgacaagtctaaatttcattcaaatgtcttgatcacaaagaaatatgggattaacaagaaggagctgctaag |
157 |
Q |
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|||||||||| ||||| ||| |||| ||||| || ||||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||| || | |
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| T |
4302471 |
aacttggagatgagctagccaatccttttgaaaaatctaaatgccatgcaaatgtcttgaccacaaagaaatatggtgttaacaagaatgagcttctgaa |
4302570 |
T |
|
| Q |
158 |
ggcttgtgctagcagagagttattgcttatgaag |
191 |
Q |
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|||||||||||| | ||| || |||||||||||| |
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| T |
4302571 |
ggcttgtgctagtatagaatttttgcttatgaag |
4302604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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