View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_low_10 (Length: 324)
Name: NF14853_low_10
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 38410560 - 38410813
Alignment:
| Q |
1 |
aatcatgtaatggagccctcaagtgtggataacattcatccatctgaacctgaaactgcatcagatcattcacaacaagacatgccaaaaactgcatcag |
100 |
Q |
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| T |
38410560 |
aatcatgtaatggagccctcaagtgtggataacattcatccatttgcagctgaaactgcatcagatcattcacaacaagacatgccaaaaactgcatcag |
38410659 |
T |
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| Q |
101 |
attcagatgcacaacaagagatgataaaaactgcatcagatgcacatcaactcacgcctaagggaaattattgtgctttgtgtaaaaaagtccatgacta |
200 |
Q |
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| T |
38410660 |
attcaaatgcacaacaagagataataaaaactgcatcagatgcacatcaactcacgcctaagggaaattattgtgctttgtgtaaaaaagtccatgacta |
38410759 |
T |
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| Q |
201 |
accgttagagacatacatgaacctgtttgtgtatatatactattttatgtttca |
254 |
Q |
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| T |
38410760 |
accgttagagacatacatgaacctgtttgtgtatatatgctattttatgtttca |
38410813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 2 - 253
Target Start/End: Complemental strand, 1091140 - 1090886
Alignment:
| Q |
2 |
atcatgtaatggagccctcaagtgtggataacat---tcatccatctgaacctgaaactgcatcagatcattcacaacaagacatgccaaaaactgcatc |
98 |
Q |
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|||||||| || ||| |||||||||||||||||| || |||| ||| || ||||||| |||||||||||||||||| ||||| ||||||||||||||| |
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| T |
1091140 |
atcatgtagtgcagcactcaagtgtggataacatgattcctccacctgcacttgaaactacatcagatcattcacaacgagacacgccaaaaactgcatc |
1091041 |
T |
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| Q |
99 |
agattcagatgcacaacaagagatgataaaaactgcatcagatgcacatcaactcacgcctaagggaaattattgtgctttgtgtaaaaaagtccatgac |
198 |
Q |
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| T |
1091040 |
agattcagatgcacaaaaagagatgataataactgcatcagatgcacatcaactcacagctaaaggaaattattgtgccttgtgtaaaaaagtccatgat |
1090941 |
T |
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| Q |
199 |
taaccgttagagacatacatgaacctgtttgtgtatatatactattttatgtttc |
253 |
Q |
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|||| |||||||||||||||||||| ||||| |||||||| ||||||||| |||| |
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| T |
1090940 |
taacagttagagacatacatgaaccagtttgcgtatatatgctattttatctttc |
1090886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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