View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_low_11 (Length: 321)
Name: NF14853_low_11
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 72 - 309
Target Start/End: Complemental strand, 2891535 - 2891298
Alignment:
| Q |
72 |
agttatgaattatagttacgatttattcagctatgattgttttgatctatatatgattagctataattcttgcaagagttttcattttgatgtacaagat |
171 |
Q |
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| T |
2891535 |
agttatgaattatagttacggtttattcagctatgattgttttgatctatatatgattagctataattcttgcaagagttttcattttgatgtacaagat |
2891436 |
T |
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| Q |
172 |
atttttacattgttatattagnnnnnnnnnnnnnnnnacttaaccctctaagttttaggagattgaatcctagtaattccaagtttaatcgggagataga |
271 |
Q |
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| T |
2891435 |
atttttacattgttatattagtttttttctttttttgatttaaccctctaagttttaggagattgaatcctagtaattcgaagtttaattgggagataga |
2891336 |
T |
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| Q |
272 |
aaaaatattcgtctttaatcaaagtttattatctacta |
309 |
Q |
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| T |
2891335 |
aaaaatattcgtctttaatcaaagtttattatctacta |
2891298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 2891554 - 2891521
Alignment:
| Q |
14 |
acaattgatatgtagctccagttatgaattatag |
47 |
Q |
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| T |
2891554 |
acaattgatatgtagctccagttatgaattatag |
2891521 |
T |
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