View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_low_13 (Length: 304)
Name: NF14853_low_13
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 18037018 - 18037121
Alignment:
| Q |
31 |
aaatttgaatgtgtaaaattcacttttcagttaaaattgtgatccttcatatttgtttatgtgttttcttattatcatcggtacaaatgggaaaatgaac |
130 |
Q |
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| T |
18037018 |
aaatttgaatgtgtaaaattcacttttcagttaaaatagtgatccttcatatttgtttatgtgttttcttattatcatcgatacaaatgggaaaaggaac |
18037117 |
T |
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| Q |
131 |
aaag |
134 |
Q |
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|||| |
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| T |
18037118 |
aaag |
18037121 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 280
Target Start/End: Complemental strand, 31958145 - 31958031
Alignment:
| Q |
165 |
tcccactagcatcagctagcagttggaggagaattccattcggaggcaacgcaatagaccaaaacgcgtcgtgattgccatctccaaacttagcaatata |
264 |
Q |
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||||||||||||| ||||||| |||||||||||| ||| || || ||| || |||||||||||||| ||| ||||| |||||| |||||||||||| |
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| T |
31958145 |
tcccactagcatcgcctagcaggtggaggagaattgcatcttgatgctccgcgat-gaccaaaacgcgtcttgactgccagctccaagcttagcaatata |
31958047 |
T |
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| Q |
265 |
atatgcacaaacattt |
280 |
Q |
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| T |
31958046 |
atctgcacaaatattt |
31958031 |
T |
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