View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_low_14 (Length: 283)
Name: NF14853_low_14
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 742148 - 742399
Alignment:
| Q |
15 |
aattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742148 |
aattctaaccagaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgc |
742247 |
T |
|
| Q |
115 |
caaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742248 |
caaggttcgaggtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgtt |
742347 |
T |
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| Q |
215 |
gattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgttt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
742348 |
gattacagaaatatgtgctttctccacttcttcgaaaagtagcacaatgttt |
742399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 26 - 266
Target Start/End: Original strand, 42449289 - 42449529
Alignment:
| Q |
26 |
gaaatgatcagttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgag |
125 |
Q |
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|||||| ||| | |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| || |||||||||||| |
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| T |
42449289 |
gaaatgctcactgacttcctgcattactcgatcgtgagctacttggatggtacattttcctgaaagtccacttaagagatgatcggcaccaaggttcgag |
42449388 |
T |
|
| Q |
126 |
gtcatgataacgaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaa |
225 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||| |
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| T |
42449389 |
gtcatgataatgaccatgttcgtaaaatccacagttctgccttgtccatcagttaaacttccatcctctaagatataaagtaatttgttgattactgaag |
42449488 |
T |
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| Q |
226 |
tatgtgctttctccacttcttcgaaaagtagcacaatgttt |
266 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||| |
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| T |
42449489 |
tatgtgctttctccacttcttccaaaagtagcacactgttt |
42449529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 260
Target Start/End: Original strand, 740079 - 740305
Alignment:
| Q |
39 |
acttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataacga |
138 |
Q |
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||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||| ||||||| || | |||||||| ||||||||||||| || |
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| T |
740079 |
acttcctgcattactttatcgcgagcaacttccatggtacattttcctgaaagtccacttaggagatgctcggaaccaaggtttgaggtcatgataatga |
740178 |
T |
|
| Q |
139 |
ccgtgt-----tcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgct |
233 |
Q |
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| |||| || ||||||||||||||||||||||||||||||||| ||||||| | ||||| | ||| || |||| | |||||| ||||||||| |
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| T |
740179 |
ctgtgttcctatcctaaaatccacagttctgccttgtccatcagttagcctcccataatttaagacttcaagcagagtgtttaatacagatatatgtgct |
740278 |
T |
|
| Q |
234 |
ttctccacttcttcgaaaagtagcaca |
260 |
Q |
| |
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|||||||||| || ||||||| |||| |
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| T |
740279 |
ttctccacttgctctaaaagtatcaca |
740305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 10046801 - 10046583
Alignment:
| Q |
37 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
136 |
Q |
| |
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|||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||| |
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| T |
10046801 |
ttacttccagcattactcggtcgcgagcaacttgcatggtacaatttcctgaaagtccacttatgagatgatcggcgccgaggtttgaggtcatgataat |
10046702 |
T |
|
| Q |
137 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatcctctaagatataaagtagtttgttgattacagaaatatgtgctttc |
236 |
Q |
| |
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||| |||||| |||||||||||||||| ||||| ||||||||||| || || || |||| || | ||| || |||||| |||||| ||||||||||| |
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| T |
10046701 |
gactgtgttcctaaaatccacagttcttccttggccatcagttaatcttccgtcatctaggacttgaagcagagtgttgaatacagatgtatgtgctttc |
10046602 |
T |
|
| Q |
237 |
tccacttcttcgaaaagta |
255 |
Q |
| |
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|| ||||| || ||||||| |
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| T |
10046601 |
tctacttcatcaaaaagta |
10046583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 38708406 - 38708308
Alignment:
| Q |
37 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataa |
135 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| || || |||||||| ||||||||||||| |
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| T |
38708406 |
ttacttcctgcattactcgatcacgagcaacttgcatggtgcattttcctgaaagtccacttatgagatgctcggcaccaaggtttgaggtcatgataa |
38708308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 45468462 - 45468309
Alignment:
| Q |
37 |
ttacttcctgcattactcgatcgtgagcaacttgcatggtacattttcctgaaagtccactttggagatgatcagcgccaaggttcgaggtcatgataac |
136 |
Q |
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||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||| | |
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| T |
45468462 |
ttacttcctgcatcactcgatcgcgagcagcttgcatggtacattttcctgaaagtccactcaagagatgctcagcaccaaggttagaggtcatgatgat |
45468363 |
T |
|
| Q |
137 |
gaccgtgttcgtaaaatccacagttctgccttgtccatcagttaaactcccatc |
190 |
Q |
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|| ||||| ||||||||||||||||||||||||| ||||| || |||||||| |
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| T |
45468362 |
cacagtgtttctaaaatccacagttctgccttgtccgtcagtcaacctcccatc |
45468309 |
T |
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