View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_low_16 (Length: 269)
Name: NF14853_low_16
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5593396 - 5593139
Alignment:
| Q |
1 |
caaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593396 |
caaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcc |
5593297 |
T |
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| Q |
101 |
tgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593296 |
tgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataata |
5593197 |
T |
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| Q |
201 |
agtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593196 |
agtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
5593139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5587160 - 5586906
Alignment:
| Q |
1 |
caaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcc |
100 |
Q |
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||||||||||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
5587160 |
caaactatttgcaacaatgtgtcaatgggaaatcccaagtgccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcc |
5587061 |
T |
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| Q |
101 |
tgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataata |
200 |
Q |
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| T |
5587060 |
tac---ctctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatc |
5586964 |
T |
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| Q |
201 |
agtaacattcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
258 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5586963 |
agtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttctt |
5586906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 5576791 - 5576562
Alignment:
| Q |
1 |
caaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcc |
100 |
Q |
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||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
5576791 |
caaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcc |
5576692 |
T |
|
| Q |
101 |
tgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataata |
200 |
Q |
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| T |
5576691 |
cac---ctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataata |
5576595 |
T |
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| Q |
201 |
agtaacatt-cttttaacttatccatattatga |
232 |
Q |
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|||| |||| | || |||||||| ||||||||| |
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| T |
5576594 |
agtagcattccgttcaacttatctatattatga |
5576562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 5573629 - 5573414
Alignment:
| Q |
1 |
caaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcc |
100 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
5573629 |
caaactattttaaacaatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataaccttcc |
5573530 |
T |
|
| Q |
101 |
tgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataata |
200 |
Q |
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| | |||| ||| ||| |||||||| ||||| || || ||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
5573529 |
tac---ctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgacataata |
5573433 |
T |
|
| Q |
201 |
agtaacattcttttaactt |
219 |
Q |
| |
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||||||||||||| ||||| |
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| T |
5573432 |
agtaacattctttcaactt |
5573414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5582904 - 5582835
Alignment:
| Q |
1 |
caaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattcttt |
70 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5582904 |
caaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattcttt |
5582835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
121 |
attacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
213 |
Q |
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||||||| ||||| || || |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
| Q |
163 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattat |
230 |
Q |
| |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| | ||||||| |
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| T |
12059314 |
gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 12051887 - 12051943
Alignment:
| Q |
157 |
caaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
213 |
Q |
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||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
12051887 |
caaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
173 |
caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa |
233 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |
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| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 36358051 - 36357988
Alignment:
| Q |
34 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
97 |
Q |
| |
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||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
36358051 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
36357988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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