View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14853_low_6 (Length: 378)
Name: NF14853_low_6
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14853_low_6 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 132 - 378
Target Start/End: Complemental strand, 5593655 - 5593409
Alignment:
| Q |
132 |
tttgtatttcagatcaatttaaccttaacccaaagtcaataatcacttgatcgttaacattgcatttaatatcatcaatttaattagatagatggtctgg |
231 |
Q |
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| T |
5593655 |
tttgtatttctgatcaatttaaccttaacccaaagtcaataatcacttgatcgttaacattgcatttaatatcatcaatttaattagatagatggtctcg |
5593556 |
T |
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| Q |
232 |
tatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttctt |
331 |
Q |
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| T |
5593555 |
tatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttctt |
5593456 |
T |
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| Q |
332 |
cttagatatggaatctatgataaagccatggttggtgtttccaattc |
378 |
Q |
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| T |
5593455 |
cttagagatggaatctatgataaagccatggttggtgtttcctattc |
5593409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 5593798 - 5593658
Alignment:
| Q |
19 |
atgttggtgtctttgtaagagcatctataatgaagacatctatttttgggtattgggtctcacacgaacacatcactgtaaagtctaattaaaaattgtt |
118 |
Q |
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| T |
5593798 |
atgttggtatcttgttaagagcatctataatgaagccatctatttttgggtattgggtctcacacgaacacatcactgtaaagtctaattaaaaattgtt |
5593699 |
T |
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| Q |
119 |
ctaagggtttaaatttgtatttcagatcaatttaaccttaa |
159 |
Q |
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| T |
5593698 |
ctaagggtttaaatttgtatttaagatcaatttaaccttaa |
5593658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 5582971 - 5582917
Alignment:
| Q |
324 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattc |
378 |
Q |
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| T |
5582971 |
attttcttcttagagatggattctataataaagacatggttggtgtttcctattc |
5582917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 12059091 - 12059139
Alignment:
| Q |
320 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtg |
368 |
Q |
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| T |
12059091 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12059139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 12064543 - 12064591
Alignment:
| Q |
320 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtg |
368 |
Q |
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| T |
12064543 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12064591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 12051663 - 12051707
Alignment:
| Q |
324 |
attttcttcttagatatggaatctatgataaagccatggttggtg |
368 |
Q |
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| T |
12051663 |
attttcttcttagagacggaatctatgatcaagacatggttggtg |
12051707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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