View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14853_low_8 (Length: 345)

Name: NF14853_low_8
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14853_low_8
NF14853_low_8
[»] scaffold1458 (1 HSPs)
scaffold1458 (13-330)||(962-1279)
[»] scaffold0515 (1 HSPs)
scaffold0515 (13-330)||(3130-3447)
[»] scaffold0306 (1 HSPs)
scaffold0306 (13-330)||(3130-3447)
[»] chr1 (1 HSPs)
chr1 (20-106)||(23382010-23382096)
[»] chr8 (1 HSPs)
chr8 (159-265)||(26957541-26957648)
[»] chr5 (1 HSPs)
chr5 (159-265)||(40948812-40948919)
[»] chr7 (1 HSPs)
chr7 (19-106)||(43808997-43809084)


Alignment Details
Target: scaffold1458 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 1279 - 962
Alignment:
Q  13 tagggttgttaggattatcaagcatgctatggagattattcatttgcttactgaccataatccaattcaggttatccttgatgctgtcgtcaaccgtatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1279 tagggttgttaggattatcaagcatgctatggagattattcatttgcttactgaccataatccaattcaggttatccttgatgctgtcgtcaaccgtatg 1180  T
Q  113 gatagctcatggatgtagaaatttttgagtttgatattgtgatgaataattgttggggtttggtttgttagtcaatttaggaattttgtactaagatttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1179 gatagctcatggatgtagaaatttttgagtttgatattgtgatgaataattgttggggtttggtttgttagtcaatttaggaattttgtactaagatttt 1080  T
Q  213 gcaaatcaaagtaatttttctcttttcctgtgaaggtttagtggcaaagtaaccttaaatttaccaannnnnnncttttgaaaggaaaggatgtatgagg 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  1079 gcaaatcaaagtaatttttcttttttcctgtgaaggtttagtggcaaagtaaccttaaatttaccaatttttttcttttgaaaggaaaggatgtatgagg 980  T
Q  313 tgcaagcattgaaagagg 330  Q
    ||||||||||||||||||    
T  979 tgcaagcattgaaagagg 962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 3447 - 3130
Alignment:
Q  13 tagggttgttaggattatcaagcatgctatggagattattcatttgcttactgaccataatccaattcaggttatccttgatgctgtcgtcaaccgtatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3447 tagggttgttaggattatcaagcatgctatggagattattcatttgcttactgaccataatccaattcaggttatccttgatgctgtcgtcaaccgtatg 3348  T
Q  113 gatagctcatggatgtagaaatttttgagtttgatattgtgatgaataattgttggggtttggtttgttagtcaatttaggaattttgtactaagatttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3347 gatagctcatggatgtagaaatttttgagtttgatattgtgatgaataattgttggggtttggtttgttagtcaatttaggaattttgtactaagatttt 3248  T
Q  213 gcaaatcaaagtaatttttctcttttcctgtgaaggtttagtggcaaagtaaccttaaatttaccaannnnnnncttttgaaaggaaaggatgtatgagg 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  3247 gcaaatcaaagtaatttttcttttttcctgtgaaggtttagtggcaaagtaaccttaaatttaccaatttttttcttttgaaaggaaaggatgtatgagg 3148  T
Q  313 tgcaagcattgaaagagg 330  Q
    ||||||||||||||||||    
T  3147 tgcaagcattgaaagagg 3130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 3447 - 3130
Alignment:
Q  13 tagggttgttaggattatcaagcatgctatggagattattcatttgcttactgaccataatccaattcaggttatccttgatgctgtcgtcaaccgtatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3447 tagggttgttaggattatcaagcatgctatggagattattcatttgcttactgaccataatccaattcaggttatccttgatgctgtcgtcaaccgtatg 3348  T
Q  113 gatagctcatggatgtagaaatttttgagtttgatattgtgatgaataattgttggggtttggtttgttagtcaatttaggaattttgtactaagatttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3347 gatagctcatggatgtagaaatttttgagtttgatattgtgatgaataattgttggggtttggtttgttagtcaatttaggaattttgtactaagatttt 3248  T
Q  213 gcaaatcaaagtaatttttctcttttcctgtgaaggtttagtggcaaagtaaccttaaatttaccaannnnnnncttttgaaaggaaaggatgtatgagg 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  3247 gcaaatcaaagtaatttttcttttttcctgtgaaggtttagtggcaaagtaaccttaaatttaccaatttttttcttttgaaaggaaaggatgtatgagg 3148  T
Q  313 tgcaagcattgaaagagg 330  Q
    ||||||||||||||||||    
T  3147 tgcaagcattgaaagagg 3130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 23382010 - 23382096
Alignment:
Q  20 gttaggattatcaagcatgctatggagattattcatttgcttactgaccataatccaattcaggttatccttgatgctgtcgtcaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| ||| |||||||||||||||||    
T  23382010 gttaggattatcaagcatgctatggagattattcatttgctaactgaccagaacccaattcaggtcatcgttgatgctgtcgtcaac 23382096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 26957541 - 26957648
Alignment:
Q  159 taattgttggggtttggtttgttagtcaatttaggaatttt--gtactaagattttgcaaatcaaagtaatttttctcttttcctgtgaaggtttagtgg 256  Q
    ||||||||||| |||| |||||| |||||||||||||||||  |||||  |||||||||||   ||||||||||||| ||||||||||||||||||||||    
T  26957541 taattgttgggttttg-tttgtttgtcaatttaggaatttttcgtactgggattttgcaaacagaagtaatttttcttttttcctgtgaaggtttagtgg 26957639  T
Q  257 caaagtaac 265  Q
    |||||||||    
T  26957640 caaagtaac 26957648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 40948812 - 40948919
Alignment:
Q  159 taattgttggggtttggtttgttagtcaatttaggaatttt--gtactaagattttgcaaatcaaagtaatttttctcttttcctgtgaaggtttagtgg 256  Q
    ||||||||||| |||| |||||| |||||||||||||||||  |||||  |||||||||||   ||||||||||||| ||||||||||||||||||||||    
T  40948812 taattgttgggttttg-tttgtttgtcaatttaggaatttttcgtactgggattttgcaaacagaagtaatttttcttttttcctgtgaaggtttagtgg 40948910  T
Q  257 caaagtaac 265  Q
    |||||||||    
T  40948911 caaagtaac 40948919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 43808997 - 43809084
Alignment:
Q  19 tgttaggattatcaagcatgctatggagattattcatttgcttactgaccataatccaattcaggttatccttgatgctgtcgtcaac 106  Q
    ||||||||| ||||||||||| |||||||| ||||||||||| |||||||| || |||||||| |||||| |||||||||||||||||    
T  43808997 tgttaggatcatcaagcatgccatggagatcattcatttgctaactgaccagaacccaattcaagttatcgttgatgctgtcgtcaac 43809084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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