View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14853_low_9 (Length: 337)

Name: NF14853_low_9
Description: NF14853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14853_low_9
NF14853_low_9
[»] chr4 (3 HSPs)
chr4 (142-237)||(21832402-21832497)
chr4 (243-319)||(21832797-21832873)
chr4 (23-85)||(21832285-21832347)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 21832402 - 21832497
Alignment:
Q  142 cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatccgttacc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21832402 cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatctgttacc 21832497  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 21832797 - 21832873
Alignment:
Q  243 caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcac 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21832797 caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcac 21832873  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 21832285 - 21832347
Alignment:
Q  23 agtgtggagaaataagtgttgccgataatccatttcctaattgaatgaagttgaattttatgt 85  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21832285 agtgtggagaaataagtgttgccgataatccatttcccaattgaatgaagttgaattttatgt 21832347  T

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